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elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix > Class Template Reference

#include <elxCorrespondingPointsEuclideanDistanceMetric.h>

Detailed Description

template<class TElastix>
class elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >

An metric based on the itk::CorrespondingPointsEuclideanDistancePointMetric.

The parameters used in this class are:

Parameters:
Metric: Select this metric as follows:
(Metric "CorrespondingPointsEuclideanDistanceMetric")

Definition at line 41 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

Inheritance diagram for elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >:
Inheritance graph
[legend]

Public Types

typedef Superclass2::ConfigurationPointer ConfigurationPointer
 
typedef Superclass2::ConfigurationType ConfigurationType
 
typedef itk::SmartPointer< const SelfConstPointer
 
typedef Superclass1::CoordinateRepresentationType CoordinateRepresentationType
 
typedef Superclass1::DerivativeType DerivativeType
 
typedef Superclass2::ElastixPointer ElastixPointer
 
typedef Superclass2::ElastixType ElastixType
 
typedef Superclass1::FixedImageMaskPointer FixedImageMaskPointer
 
typedef Superclass1::FixedImageMaskType FixedImageMaskType
 
typedef Superclass2::FixedImageType FixedImageType
 
typedef Superclass1::FixedPointSetConstPointer FixedPointSetConstPointer
 
typedef Superclass1::FixedPointSetType FixedPointSetType
 
typedef FixedImageType ImageType
 
typedef Superclass1::InputPointType InputPointType
 
typedef Superclass2::ITKBaseType ITKBaseType
 
typedef Superclass1::MeasureType MeasureType
 
typedef Superclass1::MovingImageMaskPointer MovingImageMaskPointer
 
typedef Superclass1::MovingImageMaskType MovingImageMaskType
 
typedef Superclass2::MovingImageType MovingImageType
 
typedef Superclass1::MovingPointSetConstPointer MovingPointSetConstPointer
 
typedef Superclass1::MovingPointSetType MovingPointSetType
 
typedef Superclass1::OutputPointType OutputPointType
 
typedef Superclass1::ParametersType ParametersType
 
typedef itk::SmartPointer< SelfPointer
 
typedef FixedPointSetType PointSetType
 
typedef Superclass2::RegistrationPointer RegistrationPointer
 
typedef Superclass2::RegistrationType RegistrationType
 
typedef CorrespondingPointsEuclideanDistanceMetric Self
 
typedef itk::CorrespondingPointsEuclideanDistancePointMetric< typename MetricBase< TElastix >::FixedPointSetType, typename MetricBase< TElastix >::MovingPointSetTypeSuperclass1
 
typedef MetricBase< TElastix > Superclass2
 
typedef Superclass1::TransformJacobianType TransformJacobianType
 
typedef Superclass1::TransformParametersType TransformParametersType
 
typedef Superclass1::TransformPointer TransformPointer
 
typedef Superclass1::TransformType TransformType
 
- Public Types inherited from itk::CorrespondingPointsEuclideanDistancePointMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
typedef SmartPointer< const SelfConstPointer
 
typedef OutputPointType::CoordRepType CoordRepType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef Superclass::DerivativeValueType DerivativeValueType
 
typedef Superclass::FixedPointSetConstPointer FixedPointSetConstPointer
 
typedef Superclass::FixedPointSetType FixedPointSetType
 
typedef Superclass::InputPointType InputPointType
 
typedef Superclass::MeasureType MeasureType
 
typedef Superclass::MovingPointSetConstPointer MovingPointSetConstPointer
 
typedef Superclass::MovingPointSetType MovingPointSetType
 
typedef Superclass::NonZeroJacobianIndicesType NonZeroJacobianIndicesType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::PointDataIterator PointDataIterator
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::PointIterator PointIterator
 
typedef CorrespondingPointsEuclideanDistancePointMetric Self
 
typedef SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetTypeSuperclass
 
typedef Superclass::TransformJacobianType TransformJacobianType
 
typedef Superclass::TransformParametersType TransformParametersType
 
typedef Superclass::TransformPointer TransformPointer
 
typedef Superclass::TransformType TransformType
 
typedef vnl_vector< CoordRepTypeVnlVectorType
 
- Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
typedef SmartPointer< const SelfConstPointer
 
typedef Superclass::ParametersValueType CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef FixedImageMaskType::ConstPointer FixedImageMaskConstPointer
 
typedef FixedImageMaskType::Pointer FixedImageMaskPointer
 
typedef SpatialObject< itkGetStaticConstMacro(FixedPointSetDimension) > FixedImageMaskType
 
typedef FixedPointSetType::ConstPointer FixedPointSetConstPointer
 
typedef FixedPointSetType::PixelType FixedPointSetPixelType
 
typedef MetricBase< TElastix >::FixedPointSetType FixedPointSetType
 
typedef TransformType::InputPointType InputPointType
 
typedef Superclass::MeasureType MeasureType
 
typedef MovingImageMaskType::ConstPointer MovingImageMaskConstPointer
 
typedef MovingImageMaskType::Pointer MovingImageMaskPointer
 
typedef SpatialObject< itkGetStaticConstMacro(MovingPointSetDimension) > MovingImageMaskType
 
typedef MovingPointSetType::ConstPointer MovingPointSetConstPointer
 
typedef MovingPointSetType::PixelType MovingPointSetPixelType
 
typedef MetricBase< TElastix >::MovingPointSetType MovingPointSetType
 
typedef TransformType::NonZeroJacobianIndicesType NonZeroJacobianIndicesType
 
typedef TransformType::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef FixedPointSetType::PointDataContainer::ConstIterator PointDataIterator
 
typedef SmartPointer< SelfPointer
 
typedef FixedPointSetType::PointsContainer::ConstIterator PointIterator
 
typedef SingleValuedPointSetToPointSetMetric Self
 
typedef SingleValuedCostFunction Superclass
 
typedef TransformType::JacobianType TransformJacobianType
 
typedef TransformType::ParametersType TransformParametersType
 
typedef TransformType::Pointer TransformPointer
 
typedef AdvancedTransform< CoordinateRepresentationType, itkGetStaticConstMacro(FixedPointSetDimension), itkGetStaticConstMacro(MovingPointSetDimension) > TransformType
 
- Public Types inherited from elastix::MetricBase< TElastix >
typedef itk::AdvancedImageToImageMetric< FixedImageType, MovingImageTypeAdvancedMetricType
 
typedef Superclass::ConfigurationPointer ConfigurationPointer
 
typedef Superclass::ConfigurationType ConfigurationType
 
typedef ITKBaseType::ParametersValueType CoordinateRepresentationType
 
typedef Superclass::ElastixPointer ElastixPointer
 
typedef Superclass::ElastixType ElastixType
 
typedef ElastixType::FixedImageType FixedImageType
 
typedef itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > FixedPointSetType
 
typedef FixedImageType::PointType FixedPointType
 
typedef FixedPointType::ValueType FixedPointValueType
 
typedef AdvancedMetricType::ImageSamplerType ImageSamplerBaseType
 
typedef itk::SingleValuedCostFunction ITKBaseType
 
typedef ITKBaseType::MeasureType MeasureType
 
typedef AdvancedMetricType::MovingImageDerivativeScalesType MovingImageDerivativeScalesType
 
typedef ElastixType::MovingImageType MovingImageType
 
typedef itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > MovingPointSetType
 
typedef MovingImageType::PointType MovingPointType
 
typedef MovingPointType::ValueType MovingPointValueType
 
typedef Superclass::RegistrationPointer RegistrationPointer
 
typedef Superclass::RegistrationType RegistrationType
 
typedef MetricBase Self
 
typedef BaseComponentSE< TElastix > Superclass
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef ElastixType::ConfigurationPointer ConfigurationPointer
 
typedef ElastixType::ConfigurationType ConfigurationType
 
typedef ElastixType::Pointer ElastixPointer
 
typedef TElastix ElastixType
 
typedef RegistrationTypeRegistrationPointer
 
typedef ElastixType::RegistrationBaseType RegistrationType
 
typedef BaseComponentSE Self
 
typedef BaseComponent Superclass
 

Public Member Functions

virtual int BeforeAllBase (void)
 
virtual void BeforeRegistration (void)
 
 elxClassNameMacro ("CorrespondingPointsEuclideanDistanceMetric")
 
virtual const char * GetClassName () const
 
virtual void Initialize (void) throw ( itk::ExceptionObject )
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
unsigned int ReadLandmarks (const std::string &landmarkFileName, typename PointSetType::Pointer &pointSet, const typename ImageType::ConstPointer image)
 
virtual void SelectNewSamples (void)
 
- Public Member Functions inherited from itk::CorrespondingPointsEuclideanDistancePointMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
void GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const
 
MeasureType GetValue (const TransformParametersType &parameters) const
 
void GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
 
- Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
virtual void BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
 
virtual const FixedImageMaskTypeGetFixedImageMask ()
 
virtual const FixedPointSetTypeGetFixedPointSet ()
 
virtual const MovingImageMaskTypeGetMovingImageMask ()
 
virtual const MovingPointSetTypeGetMovingPointSet ()
 
unsigned int GetNumberOfParameters (void) const
 
virtual const TransformTypeGetTransform ()
 
virtual const boolGetUseMetricSingleThreaded ()
 
 itkStaticConstMacro (FixedPointSetDimension, unsigned int, MetricBase< TElastix >::FixedPointSetType::PointDimension)
 
 itkStaticConstMacro (MovingPointSetDimension, unsigned int, MetricBase< TElastix >::MovingPointSetType::PointDimension)
 
virtual void SetFixedImageMask (const FixedImageMaskType *_arg)
 
virtual void SetFixedPointSet (const FixedPointSetType *_arg)
 
virtual void SetMovingImageMask (const MovingImageMaskType *_arg)
 
virtual void SetMovingPointSet (const MovingPointSetType *_arg)
 
virtual void SetTransform (TransformType *_arg)
 
void SetTransformParameters (const ParametersType &parameters) const
 
virtual void SetUseMetricSingleThreaded (bool _arg)
 
virtual void UseMetricSingleThreadedOff ()
 
virtual void UseMetricSingleThreadedOn ()
 
- Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void AfterEachIterationBase (void)
 
virtual void BeforeEachResolutionBase (void)
 
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler (void) const
 
virtual bool GetAdvancedMetricUseImageSampler (void) const
 
virtual ITKBaseTypeGetAsITKBaseType (void)
 
virtual const ITKBaseTypeGetAsITKBaseType (void) const
 
virtual MeasureType GetCurrentExactMetricValue (void) const
 
virtual bool GetShowExactMetricValue (void) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
 
virtual ElastixTypeGetElastix (void) const
 
virtual RegistrationPointer GetRegistration (void) const
 
virtual void SetConfiguration (ConfigurationType *_arg)
 
virtual void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration (void)
 
virtual void AfterEachResolution (void)
 
virtual void AfterEachResolutionBase (void)
 
virtual void AfterRegistration (void)
 
virtual void AfterRegistrationBase (void)
 
virtual int BeforeAll (void)
 
virtual void BeforeEachResolution (void)
 
virtual void BeforeRegistrationBase (void)
 
std::string ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision) const
 
virtual const char * elxGetClassName (void) const
 
virtual const char * GetComponentLabel (void) const
 
virtual void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::CorrespondingPointsEuclideanDistancePointMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
static Pointer New ()
 

Protected Member Functions

 CorrespondingPointsEuclideanDistanceMetric ()
 
virtual ~CorrespondingPointsEuclideanDistanceMetric ()
 
- Protected Member Functions inherited from itk::CorrespondingPointsEuclideanDistancePointMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
 CorrespondingPointsEuclideanDistancePointMetric ()
 
virtual ~CorrespondingPointsEuclideanDistancePointMetric ()
 
- Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
void PrintSelf (std::ostream &os, Indent indent) const
 
 SingleValuedPointSetToPointSetMetric ()
 
virtual ~SingleValuedPointSetToPointSetMetric ()
 
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 
 MetricBase ()
 
virtual ~MetricBase ()
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
 
virtual ~BaseComponentSE ()
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
 
virtual ~BaseComponent ()
 

Private Member Functions

 CorrespondingPointsEuclideanDistanceMetric (const Self &)
 
void operator= (const Self &)
 

Additional Inherited Members

- Protected Types inherited from elastix::MetricBase< TElastix >
typedef ExactMetricImageSamplerType::Pointer ExactMetricImageSamplerPointer
 
typedef itk::ImageGridSampler< FixedImageTypeExactMetricImageSamplerType
 
typedef ExactMetricImageSamplerType::SampleGridSpacingType ExactMetricSampleGridSpacingType
 
typedef ITKBaseType::ParametersType ParametersType
 
- Protected Attributes inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
FixedImageMaskConstPointer m_FixedImageMask
 
FixedPointSetConstPointer m_FixedPointSet
 
MovingImageMaskConstPointer m_MovingImageMask
 
MovingPointSetConstPointer m_MovingPointSet
 
unsigned int m_NumberOfPointsCounted
 
TransformPointer m_Transform
 
bool m_UseMetricSingleThreaded
 
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue
 
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
 
ExactMetricImageSamplerPointer m_ExactMetricSampler
 
bool m_ShowExactMetricValue
 
- Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer m_Configuration
 
ElastixPointer m_Elastix
 
RegistrationPointer m_Registration
 

Member Typedef Documentation

template<class TElastix >
typedef itk::SmartPointer< const Self > elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::ConstPointer

Typedefs from the superclass.

Definition at line 73 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

Typedefs inherited from elastix.

Definition at line 96 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

template<class TElastix >
typedef FixedImageType elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::ImageType
template<class TElastix >
typedef itk::SmartPointer< Self > elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::Pointer

Assuming fixed and moving pointsets are of equal type, which implicitly assumes that the fixed and moving image are of the same type.

Definition at line 117 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

Standard ITK-stuff.

Definition at line 51 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

template<class TElastix >
typedef MetricBase< TElastix > elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::Superclass2

Constructor & Destructor Documentation

template<class TElastix >
elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::CorrespondingPointsEuclideanDistanceMetric ( )
inlineprotected

The constructor.

Definition at line 150 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

template<class TElastix >
virtual elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::~CorrespondingPointsEuclideanDistanceMetric ( )
inlineprotectedvirtual

The destructor.

Definition at line 152 of file elxCorrespondingPointsEuclideanDistanceMetric.h.

template<class TElastix >
elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::CorrespondingPointsEuclideanDistanceMetric ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual int elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::BeforeAllBase ( void  )
virtual

Do some things before all:

  • Check and print the command line arguments fp and mp. This should be done in BeforeAllBase and not BeforeAll.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::BeforeRegistration ( void  )
virtual

Do some things before registration:

  • Load and set the pointsets.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::elxClassNameMacro ( "CorrespondingPointsEuclideanDistanceMetric< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "CorrespondingPointsEuclideanDistanceMetric")

template<class TElastix >
virtual const char* elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
virtual void elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::Initialize ( void  )
throw (itk::ExceptionObject
)
virtual

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >.

template<class TElastix >
elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

template<class TElastix >
elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

template<class TElastix >
static Pointer elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::New ( )
static

Method for creation through the object factory.

template<class TElastix >
void elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::operator= ( const Self )
private

The private copy constructor.

template<class TElastix >
unsigned int elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::ReadLandmarks ( const std::string &  landmarkFileName,
typename PointSetType::Pointer &  pointSet,
const typename ImageType::ConstPointer  image 
)

Function to read the corresponding points.

template<class TElastix >
virtual void elastix::CorrespondingPointsEuclideanDistanceMetric< TElastix >::SelectNewSamples ( void  )
inlinevirtual

Overwrite to silence warning.

Reimplemented from elastix::MetricBase< TElastix >.

Definition at line 145 of file elxCorrespondingPointsEuclideanDistanceMetric.h.



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