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#include <elxFullSearchOptimizer.h>
An optimizer based on the itk::FullSearchOptimizer.
Optimizer that scans a subspace of the parameter space and searches for the best parameters.
The results are written to the output-directory as an image OptimizationSurface.<elastixlevel>.R<resolution>.mhd", which is an N-dimensional float image, where N is the dimension of the search space.
The parameters used in this class are:
Optimizer: Select this optimizer as follows:
(Optimizer "FullSearch")
FullSearchSpace<r>: Defines for resolution r a range of parameters to scan.
Full syntax: (FullSearchSpace<r> <parameter_name> <parameter_nr> <min> <max> <stepsize> [...] )
example: (FullSearchSpace0 "translation_x" 2 -4.0 3.0 1.0 "rotation_y" 3 -1.0 1.0 0.5)
This varies the second transform parameter in the range [-4.0 3.0] with steps of 1.0 and the third parameter in the range [-1.0 1.0] with steps of 0.5. The names are used as column headers in the screen output.
Definition at line 57 of file elxFullSearchOptimizer.h.
Public Member Functions | |
virtual void | AfterEachIteration (void) |
virtual void | AfterEachResolution (void) |
virtual void | AfterRegistration (void) |
virtual void | BeforeEachResolution (void) |
virtual void | BeforeRegistration (void) |
elxClassNameMacro ("FullSearch") | |
virtual const char * | GetClassName () const |
virtual NDImageType * | GetOptimizationSurface () |
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virtual void | AddSearchDimension (unsigned int param_nr, RangeValueType minimum, RangeValueType maximum, RangeValueType step) |
virtual const SearchSpaceIndexType & | GetBestIndexInSearchSpace () |
virtual const SearchSpacePointType & | GetBestPointInSearchSpace () |
virtual double | GetBestValue () const |
virtual const SearchSpaceIndexType & | GetCurrentIndexInSearchSpace () |
virtual unsigned long | GetCurrentIteration () const |
virtual const SearchSpacePointType & | GetCurrentPointInSearchSpace () |
virtual bool | GetMaximize () const |
bool | GetMinimize () const |
virtual unsigned long | GetNumberOfIterations (void) |
virtual unsigned int | GetNumberOfSearchSpaceDimensions (void) |
virtual SearchSpaceType * | GetSearchSpace () |
virtual const SearchSpaceSizeType & | GetSearchSpaceSize (void) |
virtual StopConditionType | GetStopCondition () const |
virtual double | GetValue () const |
virtual SearchSpacePointType | IndexToPoint (const SearchSpaceIndexType &index) |
virtual ParametersType | IndexToPosition (const SearchSpaceIndexType &index) |
virtual void | MaximizeOff () |
virtual void | MaximizeOn () |
void | MinimizeOff () |
void | MinimizeOn () |
virtual ParametersType | PointToPosition (const SearchSpacePointType &point) |
virtual void | RemoveSearchDimension (unsigned int param_nr) |
virtual void | ResumeOptimization (void) |
virtual void | SetMaximize (bool _arg) |
void | SetMinimize (bool v) |
virtual void | SetSearchSpace (SearchSpaceType *_arg) |
virtual void | StartOptimization (void) |
virtual void | StopOptimization (void) |
virtual void | UpdateCurrentPosition (void) |
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virtual void | AfterRegistrationBase (void) |
virtual void | BeforeEachResolutionBase () |
virtual ITKBaseType * | GetAsITKBaseType (void) |
virtual const ITKBaseType * | GetAsITKBaseType (void) const |
virtual void | SetCurrentPositionPublic (const ParametersType ¶m) |
virtual void | SetSinusScales (double amplitude, double frequency, unsigned long numberOfParameters) |
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virtual ConfigurationType * | GetConfiguration (void) const |
virtual ElastixType * | GetElastix (void) const |
virtual RegistrationPointer | GetRegistration (void) const |
virtual void | SetConfiguration (ConfigurationType *_arg) |
virtual void | SetElastix (ElastixType *_arg) |
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virtual void | AfterEachIterationBase (void) |
virtual void | AfterEachResolutionBase (void) |
virtual int | BeforeAll (void) |
virtual int | BeforeAllBase (void) |
virtual void | BeforeRegistrationBase (void) |
std::string | ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision) const |
virtual const char * | elxGetClassName (void) const |
virtual const char * | GetComponentLabel (void) const |
virtual void | SetComponentLabel (const char *label, unsigned int idx) |
Static Public Member Functions | |
static Pointer | New () |
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static Pointer | New () |
Protected Member Functions | |
virtual bool | CheckSearchSpaceRangeDefinition (const std::string &fullFieldName, const bool found, const unsigned int entry_nr) const |
FullSearch () | |
virtual | ~FullSearch () |
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FullSearchOptimizer () | |
virtual void | ProcessSearchSpaceChanges (void) |
virtual | ~FullSearchOptimizer () |
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virtual bool | GetNewSamplesEveryIteration (void) const |
OptimizerBase () | |
virtual void | SelectNewSamples (void) |
virtual | ~OptimizerBase () |
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BaseComponentSE () | |
virtual | ~BaseComponentSE () |
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BaseComponent () | |
virtual | ~BaseComponent () |
Private Member Functions | |
FullSearch (const Self &) | |
void | operator= (const Self &) |
typedef Superclass2::ConfigurationPointer elastix::FullSearch< TElastix >::ConfigurationPointer |
Definition at line 103 of file elxFullSearchOptimizer.h.
typedef Superclass2::ConfigurationType elastix::FullSearch< TElastix >::ConfigurationType |
Definition at line 102 of file elxFullSearchOptimizer.h.
typedef itk::SmartPointer< const Self > elastix::FullSearch< TElastix >::ConstPointer |
Definition at line 70 of file elxFullSearchOptimizer.h.
typedef Superclass1::CostFunctionPointer elastix::FullSearch< TElastix >::CostFunctionPointer |
Definition at line 86 of file elxFullSearchOptimizer.h.
typedef Superclass1::CostFunctionType elastix::FullSearch< TElastix >::CostFunctionType |
Typedef's inherited from Superclass1.
Definition at line 85 of file elxFullSearchOptimizer.h.
typedef std::map< unsigned int, std::string > elastix::FullSearch< TElastix >::DimensionNameMapType |
To store the names of the search space dimensions
Definition at line 113 of file elxFullSearchOptimizer.h.
typedef Superclass2::ElastixPointer elastix::FullSearch< TElastix >::ElastixPointer |
Definition at line 101 of file elxFullSearchOptimizer.h.
typedef Superclass2::ElastixType elastix::FullSearch< TElastix >::ElastixType |
Typedef's inherited from Elastix.
Definition at line 100 of file elxFullSearchOptimizer.h.
typedef Superclass2::ITKBaseType elastix::FullSearch< TElastix >::ITKBaseType |
Definition at line 106 of file elxFullSearchOptimizer.h.
typedef Superclass1::MeasureType elastix::FullSearch< TElastix >::MeasureType |
Definition at line 88 of file elxFullSearchOptimizer.h.
typedef DimensionNameMapType::const_iterator elastix::FullSearch< TElastix >::NameIteratorType |
Definition at line 114 of file elxFullSearchOptimizer.h.
typedef NDImageType::Pointer elastix::FullSearch< TElastix >::NDImagePointer |
Definition at line 110 of file elxFullSearchOptimizer.h.
typedef itk::NDImageBase< float > elastix::FullSearch< TElastix >::NDImageType |
To store the results of the full search
Definition at line 109 of file elxFullSearchOptimizer.h.
typedef Superclass1::ParametersType elastix::FullSearch< TElastix >::ParametersType |
Definition at line 87 of file elxFullSearchOptimizer.h.
typedef Superclass1::ParameterValueType elastix::FullSearch< TElastix >::ParameterValueType |
Definition at line 89 of file elxFullSearchOptimizer.h.
typedef itk::SmartPointer< Self > elastix::FullSearch< TElastix >::Pointer |
Definition at line 69 of file elxFullSearchOptimizer.h.
typedef Superclass1::RangeType elastix::FullSearch< TElastix >::RangeType |
Definition at line 91 of file elxFullSearchOptimizer.h.
typedef Superclass1::RangeValueType elastix::FullSearch< TElastix >::RangeValueType |
Definition at line 90 of file elxFullSearchOptimizer.h.
typedef Superclass2::RegistrationPointer elastix::FullSearch< TElastix >::RegistrationPointer |
Definition at line 105 of file elxFullSearchOptimizer.h.
typedef Superclass2::RegistrationType elastix::FullSearch< TElastix >::RegistrationType |
Definition at line 104 of file elxFullSearchOptimizer.h.
typedef Superclass1::SearchSpaceIndexType elastix::FullSearch< TElastix >::SearchSpaceIndexType |
Definition at line 96 of file elxFullSearchOptimizer.h.
typedef Superclass1::SearchSpaceIteratorType elastix::FullSearch< TElastix >::SearchSpaceIteratorType |
Definition at line 94 of file elxFullSearchOptimizer.h.
typedef Superclass1::SearchSpacePointer elastix::FullSearch< TElastix >::SearchSpacePointer |
Definition at line 93 of file elxFullSearchOptimizer.h.
typedef Superclass1::SearchSpacePointType elastix::FullSearch< TElastix >::SearchSpacePointType |
Definition at line 95 of file elxFullSearchOptimizer.h.
typedef Superclass1::SearchSpaceSizeType elastix::FullSearch< TElastix >::SearchSpaceSizeType |
Definition at line 97 of file elxFullSearchOptimizer.h.
typedef Superclass1::SearchSpaceType elastix::FullSearch< TElastix >::SearchSpaceType |
Definition at line 92 of file elxFullSearchOptimizer.h.
typedef FullSearch elastix::FullSearch< TElastix >::Self |
Standard ITK.
Definition at line 66 of file elxFullSearchOptimizer.h.
typedef itk::FullSearchOptimizer elastix::FullSearch< TElastix >::Superclass1 |
Definition at line 67 of file elxFullSearchOptimizer.h.
typedef OptimizerBase< TElastix > elastix::FullSearch< TElastix >::Superclass2 |
Definition at line 68 of file elxFullSearchOptimizer.h.
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Definition at line 135 of file elxFullSearchOptimizer.h.
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Reimplemented from elastix::BaseComponent.
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Reimplemented from elastix::BaseComponent.
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Reimplemented from elastix::BaseComponent.
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Reimplemented from elastix::BaseComponent.
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Methods that have to be present everywhere.
Reimplemented from elastix::BaseComponent.
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Checks if an error generated while reading the search space ranges from the parameter file is a real error. Prints some error message if so.
elastix::FullSearch< TElastix >::elxClassNameMacro | ( | "FullSearch< TElastix >" | ) |
Name of this class. Use this name in the parameter file to select this specific optimizer.
example: (Optimizer "FullSearch")
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Run-time type information (and related methods).
Reimplemented from itk::FullSearchOptimizer.
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Get a pointer to the image containing the optimization surface.
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Method for creation through the object factory.
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Definition at line 137 of file elxFullSearchOptimizer.h.
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Definition at line 139 of file elxFullSearchOptimizer.h.
Generated on 04-09-2015
for elastix by ![]() |
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