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elastix::Simplex< TElastix > Class Template Reference

#include <elxSimplex.h>

Detailed Description

template<class TElastix>
class elastix::Simplex< TElastix >

An optimizer based on Simplex...

This optimizer is a wrap around the itk::AmoebaOptimizer. This wrap-around class takes care of setting parameters, and printing progress information. For detailed information about the optimisation method, please read the documentation of the itkAmoebaOptimizer (in the ITK-manual).

See also
ImprovedSimplexOptimizer

Definition at line 41 of file elxSimplex.h.

Inheritance diagram for elastix::Simplex< TElastix >:
Inheritance graph
[legend]

Public Types

typedef Superclass2::ConfigurationPointer ConfigurationPointer
 
typedef Superclass2::ConfigurationType ConfigurationType
 
typedef itk::SmartPointer< const SelfConstPointer
 
typedef Superclass1::CostFunctionPointer CostFunctionPointer
 
typedef Superclass1::CostFunctionType CostFunctionType
 
typedef Superclass2::ElastixPointer ElastixPointer
 
typedef Superclass2::ElastixType ElastixType
 
typedef Superclass2::ITKBaseType ITKBaseType
 
typedef Superclass1::ParametersType ParametersType
 
typedef itk::SmartPointer< SelfPointer
 
typedef Superclass2::RegistrationPointer RegistrationPointer
 
typedef Superclass2::RegistrationType RegistrationType
 
typedef Simplex Self
 
typedef AmoebaOptimizer Superclass1
 
typedef OptimizerBase< TElastix > Superclass2
 
- Public Types inherited from elastix::OptimizerBase< TElastix >
typedef Superclass::ConfigurationPointer ConfigurationPointer
 
typedef Superclass::ConfigurationType ConfigurationType
 
typedef Superclass::ElastixPointer ElastixPointer
 
typedef Superclass::ElastixType ElastixType
 
typedef itk::Optimizer ITKBaseType
 
typedef ITKBaseType::ParametersType ParametersType
 
typedef Superclass::RegistrationPointer RegistrationPointer
 
typedef Superclass::RegistrationType RegistrationType
 
typedef OptimizerBase Self
 
typedef BaseComponentSE< TElastix > Superclass
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef ElastixType::ConfigurationPointer ConfigurationPointer
 
typedef ElastixType::ConfigurationType ConfigurationType
 
typedef ElastixType::Pointer ElastixPointer
 
typedef TElastix ElastixType
 
typedef RegistrationTypeRegistrationPointer
 
typedef ElastixType::RegistrationBaseType RegistrationType
 
typedef BaseComponentSE Self
 
typedef BaseComponent Superclass
 

Public Member Functions

virtual void AfterEachIteration (void)
 
virtual void AfterEachResolution (void)
 
virtual void AfterRegistration (void)
 
virtual void BeforeEachResolution (void)
 
virtual void BeforeRegistration (void)
 
 elxClassNameMacro ("Simplex")
 
virtual const char * GetClassName () const
 
virtual void SetInitialPosition (const ParametersType &param)
 
- Public Member Functions inherited from elastix::OptimizerBase< TElastix >
virtual void AfterRegistrationBase (void)
 
virtual void BeforeEachResolutionBase ()
 
virtual ITKBaseTypeGetAsITKBaseType (void)
 
virtual const ITKBaseTypeGetAsITKBaseType (void) const
 
virtual void SetCurrentPositionPublic (const ParametersType &param)
 
virtual void SetSinusScales (double amplitude, double frequency, unsigned long numberOfParameters)
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
 
virtual ElastixTypeGetElastix (void) const
 
virtual RegistrationPointer GetRegistration (void) const
 
virtual void SetConfiguration (ConfigurationType *_arg)
 
virtual void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIterationBase (void)
 
virtual void AfterEachResolutionBase (void)
 
virtual int BeforeAll (void)
 
virtual int BeforeAllBase (void)
 
virtual void BeforeRegistrationBase (void)
 
std::string ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision) const
 
virtual const char * elxGetClassName (void) const
 
virtual const char * GetComponentLabel (void) const
 
virtual void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

 Simplex ()
 
virtual ~Simplex ()
 
- Protected Member Functions inherited from elastix::OptimizerBase< TElastix >
virtual bool GetNewSamplesEveryIteration (void) const
 
 OptimizerBase ()
 
virtual void SelectNewSamples (void)
 
virtual ~OptimizerBase ()
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
 
virtual ~BaseComponentSE ()
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
 
virtual ~BaseComponent ()
 

Private Member Functions

void operator= (const Self &)
 
 Simplex (const Self &)
 

Additional Inherited Members

- Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer m_Configuration
 
ElastixPointer m_Elastix
 
RegistrationPointer m_Registration
 

Member Typedef Documentation

template<class TElastix >
typedef Superclass2::ConfigurationPointer elastix::Simplex< TElastix >::ConfigurationPointer

Definition at line 76 of file elxSimplex.h.

template<class TElastix >
typedef Superclass2::ConfigurationType elastix::Simplex< TElastix >::ConfigurationType

Definition at line 75 of file elxSimplex.h.

template<class TElastix >
typedef itk::SmartPointer< const Self > elastix::Simplex< TElastix >::ConstPointer

Definition at line 54 of file elxSimplex.h.

template<class TElastix >
typedef Superclass1::CostFunctionPointer elastix::Simplex< TElastix >::CostFunctionPointer

Definition at line 70 of file elxSimplex.h.

template<class TElastix >
typedef Superclass1::CostFunctionType elastix::Simplex< TElastix >::CostFunctionType

Typedef's inherited from Superclass1.

Definition at line 69 of file elxSimplex.h.

template<class TElastix >
typedef Superclass2::ElastixPointer elastix::Simplex< TElastix >::ElastixPointer

Definition at line 74 of file elxSimplex.h.

template<class TElastix >
typedef Superclass2::ElastixType elastix::Simplex< TElastix >::ElastixType

Typedef's inherited from Elastix.

Definition at line 73 of file elxSimplex.h.

template<class TElastix >
typedef Superclass2::ITKBaseType elastix::Simplex< TElastix >::ITKBaseType

Definition at line 79 of file elxSimplex.h.

template<class TElastix >
typedef Superclass1::ParametersType elastix::Simplex< TElastix >::ParametersType

Typedef for the ParametersType.

Definition at line 82 of file elxSimplex.h.

template<class TElastix >
typedef itk::SmartPointer< Self > elastix::Simplex< TElastix >::Pointer

Definition at line 53 of file elxSimplex.h.

template<class TElastix >
typedef Superclass2::RegistrationPointer elastix::Simplex< TElastix >::RegistrationPointer

Definition at line 78 of file elxSimplex.h.

template<class TElastix >
typedef Superclass2::RegistrationType elastix::Simplex< TElastix >::RegistrationType

Definition at line 77 of file elxSimplex.h.

template<class TElastix >
typedef Simplex elastix::Simplex< TElastix >::Self

Standard ITK.

Definition at line 50 of file elxSimplex.h.

template<class TElastix >
typedef AmoebaOptimizer elastix::Simplex< TElastix >::Superclass1

Definition at line 51 of file elxSimplex.h.

template<class TElastix >
typedef OptimizerBase< TElastix > elastix::Simplex< TElastix >::Superclass2

Definition at line 52 of file elxSimplex.h.

Constructor & Destructor Documentation

template<class TElastix >
elastix::Simplex< TElastix >::Simplex ( )
inlineprotected

Definition at line 104 of file elxSimplex.h.

template<class TElastix >
virtual elastix::Simplex< TElastix >::~Simplex ( )
inlineprotectedvirtual

Definition at line 105 of file elxSimplex.h.

template<class TElastix >
elastix::Simplex< TElastix >::Simplex ( const Self )
private

Member Function Documentation

template<class TElastix >
virtual void elastix::Simplex< TElastix >::AfterEachIteration ( void  )
virtual

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::Simplex< TElastix >::AfterEachResolution ( void  )
virtual

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::Simplex< TElastix >::AfterRegistration ( void  )
virtual

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::Simplex< TElastix >::BeforeEachResolution ( void  )
virtual

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::Simplex< TElastix >::BeforeRegistration ( void  )
virtual

Methods invoked by elastix, in which parameters can be set and progress information can be printed.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::Simplex< TElastix >::elxClassNameMacro ( "Simplex< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific optimizer.
example: (Optimizer "Simplex")

template<class TElastix >
virtual const char* elastix::Simplex< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::OptimizerBase< TElastix >.

template<class TElastix >
static Pointer elastix::Simplex< TElastix >::New ( )
static

Method for creation through the object factory.

template<class TElastix >
void elastix::Simplex< TElastix >::operator= ( const Self )
private
template<class TElastix >
virtual void elastix::Simplex< TElastix >::SetInitialPosition ( const ParametersType param)
virtual

Override the SetInitialPosition. Override the implementation in itkOptimizer.h, to ensure that the scales array and the parameters array have the same size.



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