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elastix::StatisticalShapePenalty< TElastix > Class Template Reference

#include <elxStatisticalShapePenalty.h>

Detailed Description

template<class TElastix>
class elastix::StatisticalShapePenalty< TElastix >

An metric based on the itk::StatisticalShapePointPenalty.

The parameters used in this class are:

Parameters:

Metric: Select this metric as follows:
(Metric "StatisticalShapePenalty")

ShrinkageIntensity: The mixing ratio ($$) of the provided covariance matrix and an identity matrix. $' = (1-) + ^2 I$ Can be defined for each resolution
example: (ShrinkageIntensity 0.2)

BaseVariance: The width ($^2$) of the non-informative prior. Can be defined for each resolution
example: (BaseVariance 1000.0)

Author
F.F. Berendsen, Image Sciences Institute, UMC Utrecht, The Netherlands
Note
This work was funded by the projects Care4Me and Mediate.
If you use the StatisticalShapePenalty anywhere we would appreciate if you cite the following article:
F.F. Berendsen et al., Free-form image registration regularized by a statistical shape model: application to organ segmentation in cervical MR, Comput. Vis. Image Understand. (2013), http://dx.doi.org/10.1016/j.cviu.2012.12.006

Definition at line 59 of file elxStatisticalShapePenalty.h.

Inheritance diagram for elastix::StatisticalShapePenalty< TElastix >:
Inheritance graph
[legend]

Public Types

typedef itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro(FixedImageDimension) > CombinationTransformType
 
typedef Superclass2::ConfigurationPointer ConfigurationPointer
 
typedef Superclass2::ConfigurationType ConfigurationType
 
typedef SmartPointer< const SelfConstPointer
 
typedef Superclass1::CoordinateRepresentationType CoordinateRepresentationType
 
typedef OutputPointType::CoordRepType CoordRepType
 
typedef Superclass1::DerivativeType DerivativeType
 
typedef Superclass2::ElastixPointer ElastixPointer
 
typedef Superclass2::ElastixType ElastixType
 
typedef Superclass1::FixedImageMaskPointer FixedImageMaskPointer
 
typedef Superclass1::FixedImageMaskType FixedImageMaskType
 
typedef Superclass2::FixedImageType FixedImageType
 
typedef Superclass1::FixedPointSetConstPointer FixedPointSetConstPointer
 
typedef Superclass1::FixedPointSetType FixedPointSetType
 
typedef FixedImageType ImageType
 
typedef CombinationTransformType::InitialTransformType InitialTransformType
 
typedef Superclass1::InputPointType InputPointType
 
typedef Superclass2::ITKBaseType ITKBaseType
 
typedef Superclass1::MeasureType MeasureType
 
typedef Superclass1::MovingImageMaskPointer MovingImageMaskPointer
 
typedef Superclass1::MovingImageMaskType MovingImageMaskType
 
typedef Superclass2::MovingImageType MovingImageType
 
typedef Superclass1::MovingPointSetConstPointer MovingPointSetConstPointer
 
typedef Superclass1::MovingPointSetType MovingPointSetType
 
typedef itk::Object ObjectType
 
typedef Superclass1::OutputPointType OutputPointType
 
typedef Superclass1::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef FixedPointSetType PointSetType
 
typedef Superclass2::RegistrationPointer RegistrationPointer
 
typedef Superclass2::RegistrationType RegistrationType
 
typedef StatisticalShapePenalty Self
 
typedef StatisticalShapePointPenalty< typename MetricBase< TElastix >::FixedPointSetType, typename MetricBase< TElastix >::MovingPointSetTypeSuperclass1
 
typedef MetricBase< TElastix > Superclass2
 
typedef Superclass1::TransformJacobianType TransformJacobianType
 
typedef Superclass1::TransformParametersType TransformParametersType
 
typedef Superclass1::TransformPointer TransformPointer
 
typedef Superclass1::TransformType TransformType
 
typedef vnl_vector< CoordRepTypeVnlVectorType
 
- Public Types inherited from itk::StatisticalShapePointPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
typedef SmartPointer< const SelfConstPointer
 
typedef OutputPointType::CoordRepType CoordRepType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef Superclass::DerivativeValueType DerivativeValueType
 
typedef Superclass::FixedPointSetConstPointer FixedPointSetConstPointer
 
typedef Superclass::FixedPointSetType FixedPointSetType
 
typedef Superclass::InputPointType InputPointType
 
typedef Superclass::MeasureType MeasureType
 
typedef Superclass::MovingPointSetConstPointer MovingPointSetConstPointer
 
typedef Superclass::MovingPointSetType MovingPointSetType
 
typedef Superclass::NonZeroJacobianIndicesType NonZeroJacobianIndicesType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef vnl_svd_economy< CoordRepTypePCACovarianceType
 
typedef Superclass::PointDataIterator PointDataIterator
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::PointIterator PointIterator
 
typedef std::vector< VnlVectorType * > ProposalDerivativeType
 
typedef StatisticalShapePointPenalty Self
 
typedef SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetTypeSuperclass
 
typedef Superclass::TransformJacobianType TransformJacobianType
 
typedef Superclass::TransformParametersType TransformParametersType
 
typedef Superclass::TransformPointer TransformPointer
 
typedef Superclass::TransformType TransformType
 
typedef vnl_matrix< CoordRepTypeVnlMatrixType
 
typedef vnl_vector< CoordRepTypeVnlVectorType
 
- Public Types inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
typedef SmartPointer< const SelfConstPointer
 
typedef Superclass::ParametersValueType CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef FixedImageMaskType::ConstPointer FixedImageMaskConstPointer
 
typedef FixedImageMaskType::Pointer FixedImageMaskPointer
 
typedef SpatialObject< itkGetStaticConstMacro(FixedPointSetDimension) > FixedImageMaskType
 
typedef FixedPointSetType::ConstPointer FixedPointSetConstPointer
 
typedef FixedPointSetType::PixelType FixedPointSetPixelType
 
typedef MetricBase< TElastix >::FixedPointSetType FixedPointSetType
 
typedef TransformType::InputPointType InputPointType
 
typedef Superclass::MeasureType MeasureType
 
typedef MovingImageMaskType::ConstPointer MovingImageMaskConstPointer
 
typedef MovingImageMaskType::Pointer MovingImageMaskPointer
 
typedef SpatialObject< itkGetStaticConstMacro(MovingPointSetDimension) > MovingImageMaskType
 
typedef MovingPointSetType::ConstPointer MovingPointSetConstPointer
 
typedef MovingPointSetType::PixelType MovingPointSetPixelType
 
typedef MetricBase< TElastix >::MovingPointSetType MovingPointSetType
 
typedef TransformType::NonZeroJacobianIndicesType NonZeroJacobianIndicesType
 
typedef TransformType::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef FixedPointSetType::PointDataContainer::ConstIterator PointDataIterator
 
typedef SmartPointer< SelfPointer
 
typedef FixedPointSetType::PointsContainer::ConstIterator PointIterator
 
typedef SingleValuedPointSetToPointSetMetric Self
 
typedef SingleValuedCostFunction Superclass
 
typedef TransformType::JacobianType TransformJacobianType
 
typedef TransformType::ParametersType TransformParametersType
 
typedef TransformType::Pointer TransformPointer
 
typedef AdvancedTransform< CoordinateRepresentationType, itkGetStaticConstMacro(FixedPointSetDimension), itkGetStaticConstMacro(MovingPointSetDimension) > TransformType
 
- Public Types inherited from elastix::MetricBase< TElastix >
typedef itk::AdvancedImageToImageMetric< FixedImageType, MovingImageTypeAdvancedMetricType
 
typedef Superclass::ConfigurationPointer ConfigurationPointer
 
typedef Superclass::ConfigurationType ConfigurationType
 
typedef ITKBaseType::ParametersValueType CoordinateRepresentationType
 
typedef Superclass::ElastixPointer ElastixPointer
 
typedef Superclass::ElastixType ElastixType
 
typedef ElastixType::FixedImageType FixedImageType
 
typedef itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > FixedPointSetType
 
typedef FixedImageType::PointType FixedPointType
 
typedef FixedPointType::ValueType FixedPointValueType
 
typedef AdvancedMetricType::ImageSamplerType ImageSamplerBaseType
 
typedef itk::SingleValuedCostFunction ITKBaseType
 
typedef ITKBaseType::MeasureType MeasureType
 
typedef AdvancedMetricType::MovingImageDerivativeScalesType MovingImageDerivativeScalesType
 
typedef ElastixType::MovingImageType MovingImageType
 
typedef itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > MovingPointSetType
 
typedef MovingImageType::PointType MovingPointType
 
typedef MovingPointType::ValueType MovingPointValueType
 
typedef Superclass::RegistrationPointer RegistrationPointer
 
typedef Superclass::RegistrationType RegistrationType
 
typedef MetricBase Self
 
typedef BaseComponentSE< TElastix > Superclass
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef ElastixType::ConfigurationPointer ConfigurationPointer
 
typedef ElastixType::ConfigurationType ConfigurationType
 
typedef ElastixType::Pointer ElastixPointer
 
typedef TElastix ElastixType
 
typedef RegistrationTypeRegistrationPointer
 
typedef ElastixType::RegistrationBaseType RegistrationType
 
typedef BaseComponentSE Self
 
typedef BaseComponent Superclass
 

Public Member Functions

virtual void BeforeEachResolution (void)
 
virtual void BeforeRegistration (void)
 
 elxClassNameMacro ("StatisticalShapePenalty")
 
virtual const char * GetClassName () const
 
virtual void Initialize (void) throw ( ExceptionObject )
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
unsigned int ReadLandmarks (const std::string &landmarkFileName, typename PointSetType::Pointer &pointSet, const typename ImageType::ConstPointer image)
 
unsigned int ReadShape (const std::string &ShapeFileName, typename PointSetType::Pointer &pointSet, const typename ImageType::ConstPointer image)
 
virtual void SelectNewSamples (void)
 
- Public Member Functions inherited from itk::StatisticalShapePointPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
virtual void BaseVarianceNeedsUpdateOff ()
 
virtual void BaseVarianceNeedsUpdateOn ()
 
virtual MeasureType GetBaseVariance ()
 
virtual MeasureType GetCentroidXVariance ()
 
virtual MeasureType GetCentroidYVariance ()
 
virtual MeasureType GetCentroidZVariance ()
 
virtual MeasureType GetCutOffSharpness ()
 
virtual MeasureType GetCutOffValue ()
 
void GetDerivative (const TransformParametersType &parameters, DerivativeType &Derivative) const
 
virtual const boolGetNormalizedShapeModel ()
 
virtual const intGetShapeModelCalculation ()
 
virtual MeasureType GetShrinkageIntensity ()
 
virtual MeasureType GetSizeVariance ()
 
MeasureType GetValue (const TransformParametersType &parameters) const
 
void GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const
 
void Initialize (void) throw ( ExceptionObject )
 
virtual void NormalizedShapeModelOff ()
 
virtual void NormalizedShapeModelOn ()
 
virtual void SetBaseVariance (MeasureType _arg)
 
virtual void SetBaseVarianceNeedsUpdate (bool _arg)
 
virtual void SetCentroidXVariance (MeasureType _arg)
 
virtual void SetCentroidYVariance (MeasureType _arg)
 
virtual void SetCentroidZVariance (MeasureType _arg)
 
virtual void SetCovarianceMatrix (const vnl_matrix< double > *_arg)
 
virtual void SetCutOffSharpness (MeasureType _arg)
 
virtual void SetCutOffValue (MeasureType _arg)
 
virtual void SetEigenValues (const vnl_vector< double > *_arg)
 
virtual void SetEigenVectors (const vnl_matrix< double > *_arg)
 
virtual void SetMeanVector (const vnl_vector< double > *_arg)
 
virtual void SetNormalizedShapeModel (bool _arg)
 
virtual void SetShapeModelCalculation (int _arg)
 
virtual void SetShrinkageIntensity (MeasureType _arg)
 
virtual void SetShrinkageIntensityNeedsUpdate (bool _arg)
 
virtual void SetSizeVariance (MeasureType _arg)
 
virtual void SetVariancesNeedsUpdate (bool _arg)
 
virtual void ShrinkageIntensityNeedsUpdateOff ()
 
virtual void ShrinkageIntensityNeedsUpdateOn ()
 
virtual void VariancesNeedsUpdateOff ()
 
virtual void VariancesNeedsUpdateOn ()
 
- Public Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
virtual void BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
 
virtual const FixedImageMaskTypeGetFixedImageMask ()
 
virtual const FixedPointSetTypeGetFixedPointSet ()
 
virtual const MovingImageMaskTypeGetMovingImageMask ()
 
virtual const MovingPointSetTypeGetMovingPointSet ()
 
unsigned int GetNumberOfParameters (void) const
 
virtual const TransformTypeGetTransform ()
 
virtual const boolGetUseMetricSingleThreaded ()
 
 itkStaticConstMacro (FixedPointSetDimension, unsigned int, MetricBase< TElastix >::FixedPointSetType::PointDimension)
 
 itkStaticConstMacro (MovingPointSetDimension, unsigned int, MetricBase< TElastix >::MovingPointSetType::PointDimension)
 
virtual void SetFixedImageMask (const FixedImageMaskType *_arg)
 
virtual void SetFixedPointSet (const FixedPointSetType *_arg)
 
virtual void SetMovingImageMask (const MovingImageMaskType *_arg)
 
virtual void SetMovingPointSet (const MovingPointSetType *_arg)
 
virtual void SetTransform (TransformType *_arg)
 
void SetTransformParameters (const ParametersType &parameters) const
 
virtual void SetUseMetricSingleThreaded (bool _arg)
 
virtual void UseMetricSingleThreadedOff ()
 
virtual void UseMetricSingleThreadedOn ()
 
- Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void AfterEachIterationBase (void)
 
virtual void BeforeEachResolutionBase (void)
 
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler (void) const
 
virtual bool GetAdvancedMetricUseImageSampler (void) const
 
virtual ITKBaseTypeGetAsITKBaseType (void)
 
virtual const ITKBaseTypeGetAsITKBaseType (void) const
 
virtual MeasureType GetCurrentExactMetricValue (void) const
 
virtual bool GetShowExactMetricValue (void) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
 
virtual ElastixTypeGetElastix (void) const
 
virtual RegistrationPointer GetRegistration (void) const
 
virtual void SetConfiguration (ConfigurationType *_arg)
 
virtual void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachIteration (void)
 
virtual void AfterEachResolution (void)
 
virtual void AfterEachResolutionBase (void)
 
virtual void AfterRegistration (void)
 
virtual void AfterRegistrationBase (void)
 
virtual int BeforeAll (void)
 
virtual int BeforeAllBase (void)
 
virtual void BeforeRegistrationBase (void)
 
std::string ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision) const
 
virtual const char * elxGetClassName (void) const
 
virtual const char * GetComponentLabel (void) const
 
virtual void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::StatisticalShapePointPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
static Pointer New ()
 

Protected Member Functions

 StatisticalShapePenalty ()
 
virtual ~StatisticalShapePenalty ()
 
- Protected Member Functions inherited from itk::StatisticalShapePointPenalty< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
void PrintSelf (std::ostream &os, Indent indent) const
 
 StatisticalShapePointPenalty ()
 
virtual ~StatisticalShapePointPenalty ()
 
- Protected Member Functions inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
void PrintSelf (std::ostream &os, Indent indent) const
 
 SingleValuedPointSetToPointSetMetric ()
 
virtual ~SingleValuedPointSetToPointSetMetric ()
 
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 
 MetricBase ()
 
virtual ~MetricBase ()
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
 
virtual ~BaseComponentSE ()
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
 
virtual ~BaseComponent ()
 

Private Member Functions

void operator= (const Self &)
 
 StatisticalShapePenalty (const Self &)
 

Additional Inherited Members

- Protected Types inherited from elastix::MetricBase< TElastix >
typedef ExactMetricImageSamplerType::Pointer ExactMetricImageSamplerPointer
 
typedef itk::ImageGridSampler< FixedImageTypeExactMetricImageSamplerType
 
typedef ExactMetricImageSamplerType::SampleGridSpacingType ExactMetricSampleGridSpacingType
 
typedef ITKBaseType::ParametersType ParametersType
 
- Protected Attributes inherited from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >
FixedImageMaskConstPointer m_FixedImageMask
 
FixedPointSetConstPointer m_FixedPointSet
 
MovingImageMaskConstPointer m_MovingImageMask
 
MovingPointSetConstPointer m_MovingPointSet
 
unsigned int m_NumberOfPointsCounted
 
TransformPointer m_Transform
 
bool m_UseMetricSingleThreaded
 
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue
 
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
 
ExactMetricImageSamplerPointer m_ExactMetricSampler
 
bool m_ShowExactMetricValue
 
- Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer m_Configuration
 
ElastixPointer m_Elastix
 
RegistrationPointer m_Registration
 

Member Typedef Documentation

template<class TElastix >
typedef itk::AdvancedCombinationTransform< CoordRepType, itkGetStaticConstMacro( FixedImageDimension ) > elastix::StatisticalShapePenalty< TElastix >::CombinationTransformType

Definition at line 123 of file elxStatisticalShapePenalty.h.

Definition at line 131 of file elxStatisticalShapePenalty.h.

Definition at line 130 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef SmartPointer< const Self > elastix::StatisticalShapePenalty< TElastix >::ConstPointer

Definition at line 74 of file elxStatisticalShapePenalty.h.

Typedefs from the superclass.

Definition at line 90 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef OutputPointType::CoordRepType elastix::StatisticalShapePenalty< TElastix >::CoordRepType

Definition at line 112 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef Superclass1::DerivativeType elastix::StatisticalShapePenalty< TElastix >::DerivativeType

Definition at line 109 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef Superclass2::ElastixPointer elastix::StatisticalShapePenalty< TElastix >::ElastixPointer

Definition at line 129 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef Superclass2::ElastixType elastix::StatisticalShapePenalty< TElastix >::ElastixType

Typedefs inherited from elastix.

Definition at line 128 of file elxStatisticalShapePenalty.h.

Definition at line 105 of file elxStatisticalShapePenalty.h.

Definition at line 104 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef Superclass2::FixedImageType elastix::StatisticalShapePenalty< TElastix >::FixedImageType

Definition at line 135 of file elxStatisticalShapePenalty.h.

Definition at line 92 of file elxStatisticalShapePenalty.h.

Definition at line 91 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef FixedImageType elastix::StatisticalShapePenalty< TElastix >::ImageType

Definition at line 150 of file elxStatisticalShapePenalty.h.

Definition at line 125 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef Superclass1::InputPointType elastix::StatisticalShapePenalty< TElastix >::InputPointType

Definition at line 99 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef Superclass2::ITKBaseType elastix::StatisticalShapePenalty< TElastix >::ITKBaseType

Definition at line 134 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef Superclass1::MeasureType elastix::StatisticalShapePenalty< TElastix >::MeasureType

Definition at line 108 of file elxStatisticalShapePenalty.h.

Definition at line 107 of file elxStatisticalShapePenalty.h.

Definition at line 106 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef Superclass2::MovingImageType elastix::StatisticalShapePenalty< TElastix >::MovingImageType

Definition at line 136 of file elxStatisticalShapePenalty.h.

Definition at line 94 of file elxStatisticalShapePenalty.h.

Definition at line 93 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef itk::Object elastix::StatisticalShapePenalty< TElastix >::ObjectType

Other typedef's.

Definition at line 116 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef Superclass1::OutputPointType elastix::StatisticalShapePenalty< TElastix >::OutputPointType

Definition at line 100 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef Superclass1::ParametersType elastix::StatisticalShapePenalty< TElastix >::ParametersType

Definition at line 110 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef SmartPointer< Self > elastix::StatisticalShapePenalty< TElastix >::Pointer

Definition at line 73 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef FixedPointSetType elastix::StatisticalShapePenalty< TElastix >::PointSetType

Assuming fixed and moving pointsets are of equal type, which implicitly assumes that the fixed and moving image are of the same type.

Definition at line 149 of file elxStatisticalShapePenalty.h.

Definition at line 133 of file elxStatisticalShapePenalty.h.

Definition at line 132 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef StatisticalShapePenalty elastix::StatisticalShapePenalty< TElastix >::Self

Standard ITK-stuff.

Definition at line 68 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef StatisticalShapePointPenalty< typename MetricBase< TElastix >::FixedPointSetType, typename MetricBase< TElastix >::MovingPointSetType > elastix::StatisticalShapePenalty< TElastix >::Superclass1

Definition at line 71 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef MetricBase< TElastix > elastix::StatisticalShapePenalty< TElastix >::Superclass2

Definition at line 72 of file elxStatisticalShapePenalty.h.

Definition at line 102 of file elxStatisticalShapePenalty.h.

Definition at line 101 of file elxStatisticalShapePenalty.h.

Definition at line 98 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef Superclass1::TransformType elastix::StatisticalShapePenalty< TElastix >::TransformType

Definition at line 97 of file elxStatisticalShapePenalty.h.

template<class TElastix >
typedef vnl_vector< CoordRepType > elastix::StatisticalShapePenalty< TElastix >::VnlVectorType

Definition at line 113 of file elxStatisticalShapePenalty.h.

Constructor & Destructor Documentation

template<class TElastix >
elastix::StatisticalShapePenalty< TElastix >::StatisticalShapePenalty ( )
inlineprotected

The constructor.

Definition at line 182 of file elxStatisticalShapePenalty.h.

template<class TElastix >
virtual elastix::StatisticalShapePenalty< TElastix >::~StatisticalShapePenalty ( )
inlineprotectedvirtual

The destructor.

Definition at line 184 of file elxStatisticalShapePenalty.h.

template<class TElastix >
elastix::StatisticalShapePenalty< TElastix >::StatisticalShapePenalty ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::StatisticalShapePenalty< TElastix >::BeforeEachResolution ( void  )
virtual

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::StatisticalShapePenalty< TElastix >::BeforeRegistration ( void  )
virtual

Do some things before registration:

  • Load and set the pointsets.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::StatisticalShapePenalty< TElastix >::elxClassNameMacro ( "StatisticalShapePenalty< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "StatisticalShapePenalty")

template<class TElastix >
virtual const char* elastix::StatisticalShapePenalty< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
virtual void elastix::StatisticalShapePenalty< TElastix >::Initialize ( void  )
throw (ExceptionObject
)
virtual

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::SingleValuedPointSetToPointSetMetric< MetricBase< TElastix >::FixedPointSetType, MetricBase< TElastix >::MovingPointSetType >.

template<class TElastix >
elastix::StatisticalShapePenalty< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

template<class TElastix >
elastix::StatisticalShapePenalty< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

template<class TElastix >
static Pointer elastix::StatisticalShapePenalty< TElastix >::New ( )
static

Method for creation through the object factory.

template<class TElastix >
void elastix::StatisticalShapePenalty< TElastix >::operator= ( const Self )
private

The private copy constructor.

template<class TElastix >
unsigned int elastix::StatisticalShapePenalty< TElastix >::ReadLandmarks ( const std::string &  landmarkFileName,
typename PointSetType::Pointer &  pointSet,
const typename ImageType::ConstPointer  image 
)

Function to read the corresponding points.

template<class TElastix >
unsigned int elastix::StatisticalShapePenalty< TElastix >::ReadShape ( const std::string &  ShapeFileName,
typename PointSetType::Pointer &  pointSet,
const typename ImageType::ConstPointer  image 
)
template<class TElastix >
virtual void elastix::StatisticalShapePenalty< TElastix >::SelectNewSamples ( void  )
inlinevirtual

Overwrite to silence warning.

Reimplemented from elastix::MetricBase< TElastix >.

Definition at line 177 of file elxStatisticalShapePenalty.h.



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