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elastix::TransformRigidityPenalty< TElastix > Class Template Reference

#include <elxTransformRigidityPenaltyTerm.h>

Detailed Description

template<class TElastix>
class elastix::TransformRigidityPenalty< TElastix >

A penalty term based on non-rigidity.

For more information check the paper:
M. Staring, S. Klein and J.P.W. Pluim, "A Rigidity Penalty Term for Nonrigid Registration," Medical Physics, vol. 34, no. 11, pp. 4098 - 4108, November 2007.

The parameters used in this class are:

Parameters:

Metric: Select this metric as follows:
(Metric "TransformRigidityPenalty")

OrthonormalityConditionWeight: A parameter to weigh the orthonormality condition term of the rigidity term.
example: (OrthonormalityConditionWeight 2.0)
Default is 1.0.

PropernessConditionWeight: A parameter to weigh the properness condition term of the rigidity term.
example: (PropernessConditionWeight 2.0)
Default is 1.0.

UseLinearityCondition: A flag to specify the usage of the linearity condition term for optimisation.
example: (UseLinearityCondition "false")
Default is "true".

UseOrthonormalityCondition: A flag to specify the usage of the orthonormality condition term for optimisation.
example: (UseOrthonormalityCondition "false")
Default is "true".

UsePropernessCondition: A flag to specify the usage of the properness condition term for optimisation.
example: (UsePropernessCondition "false")
Default is "true".

CalculateLinearityCondition: A flag to specify if the linearity condition should still be calculated, even if it is not used for optimisation.
example: (CalculateLinearityCondition "false")
Default is "true".

CalculateOrthonormalityCondition: A flag to specify if the orthonormality condition should still be calculated, even if it is not used for optimisation.
example: (CalculateOrthonormalityCondition "false")
Default is "true".

CalculatePropernessCondition: A flag to specify if the properness condition should still be calculated, even if it is not used for optimisation.
example: (CalculatePropernessCondition "false")
Default is "true".

FixedRigidityImageName: the name of a coefficient image to specify the rigidity index of voxels in the fixed image.
example: (FixedRigidityImageName "fixedRigidityImage.mhd")
If not supplied the rigidity coefficient is not based on the fixed image, which is recommended.
If neither FixedRigidityImageName nor MovingRigidityImageName are supplied, the rigidity penalty term is evaluated on the whole transform input domain.

MovingRigidityImageName: the name of a coefficient image to specify the rigidity index of voxels in the moving image.
example: (MovingRigidityImageName "movingRigidityImage.mhd")
If not supplied the rigidity coefficient is not based on the moving image, which is NOT recommended.
If neither FixedRigidityImageName nor MovingRigidityImageName are supplied, the rigidity penalty term is evaluated on the whole transform input domain.

DilateRigidityImages: flag to specify the dilation of the rigidity coefficient images. With this the region of rigidity can be extended to force rigidity of the inner region.
example: (DilateRigidityImages "false" "false" "true")
Default is "true".

DilationRadiusMultiplier: the dilation radius is a multiplier times the grid spacing of the B-spline transform.
example: (DilationRadiusMultiplier 1.0 1.0 2.0)
Default is 1.0.

Parameters:
LinearityConditionWeight: A parameter to weigh the linearity condition term of the rigidity term.
example: (LinearityConditionWeight 2.0)
Default is 1.0.

Definition at line 111 of file elxTransformRigidityPenaltyTerm.h.

Inheritance diagram for elastix::TransformRigidityPenalty< TElastix >:
Inheritance graph
[legend]

Public Types

typedef Superclass1::CoefficientImageType CoefficientImageType
 
typedef Superclass2::ConfigurationPointer ConfigurationPointer
 
typedef Superclass2::ConfigurationType ConfigurationType
 
typedef itk::SmartPointer< const SelfConstPointer
 
typedef Superclass1::CoordinateRepresentationType CoordinateRepresentationType
 
typedef Superclass1::DerivativeType DerivativeType
 
typedef Superclass2::ElastixPointer ElastixPointer
 
typedef Superclass2::ElastixType ElastixType
 
typedef Superclass1::FixedImageConstPointer FixedImageConstPointer
 
typedef Superclass1::FixedImageLimiterOutputType FixedImageLimiterOutputType
 
typedef Superclass1::FixedImageLimiterType FixedImageLimiterType
 
typedef Superclass1::FixedImageMaskPointer FixedImageMaskPointer
 
typedef Superclass1::FixedImageMaskType FixedImageMaskType
 
typedef Superclass1::FixedImagePixelType FixedImagePixelType
 
typedef Superclass1::FixedImageRegionType FixedImageRegionType
 
typedef Superclass1::FixedImageType FixedImageType
 
typedef Superclass1::GradientImageFilterPointer GradientImageFilterPointer
 
typedef Superclass1::GradientImageFilterType GradientImageFilterType
 
typedef Superclass1::GradientImagePointer GradientImagePointer
 
typedef Superclass1::GradientImageType GradientImageType
 
typedef Superclass1::GradientPixelType GradientPixelType
 
typedef Superclass1::ImageSampleContainerPointer ImageSampleContainerPointer
 
typedef Superclass1::ImageSampleContainerType ImageSampleContainerType
 
typedef Superclass1::ImageSamplerPointer ImageSamplerPointer
 
typedef Superclass1::ImageSamplerType ImageSamplerType
 
typedef Superclass1::InputPointType InputPointType
 
typedef Superclass1::InterpolatorPointer InterpolatorPointer
 
typedef Superclass1::InterpolatorType InterpolatorType
 
typedef Superclass2::ITKBaseType ITKBaseType
 
typedef Superclass1::MeasureType MeasureType
 
typedef Superclass1::MovingImageConstPointer MovingImageConstPointer
 
typedef Superclass1::MovingImageLimiterOutputType MovingImageLimiterOutputType
 
typedef Superclass1::MovingImageLimiterType MovingImageLimiterType
 
typedef Superclass1::MovingImageMaskPointer MovingImageMaskPointer
 
typedef Superclass1::MovingImageMaskType MovingImageMaskType
 
typedef Superclass1::MovingImagePixelType MovingImagePixelType
 
typedef Superclass1::MovingImageRegionType MovingImageRegionType
 
typedef Superclass1::MovingImageType MovingImageType
 
typedef Superclass1::OutputPointType OutputPointType
 
typedef Superclass1::ParametersType ParametersType
 
typedef itk::SmartPointer< SelfPointer
 
typedef Superclass1::RealType RealType
 
typedef Superclass2::RegistrationPointer RegistrationPointer
 
typedef Superclass2::RegistrationType RegistrationType
 
typedef TransformRigidityPenalty Self
 
typedef itk::TransformRigidityPenaltyTerm< typename MetricBase< TElastix >::FixedImageType, doubleSuperclass1
 
typedef MetricBase< TElastix > Superclass2
 
typedef Superclass1::TransformJacobianType TransformJacobianType
 
typedef Superclass1::TransformParametersType TransformParametersType
 
typedef Superclass1::TransformPointer TransformPointer
 
typedef Superclass1::TransformType TransformType
 
- Public Types inherited from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef BSplineTransformType::Pointer BSplineTransformPointer
 
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 > BSplineTransformType
 
typedef ImageRegionIterator< CoefficientImageTypeCoefficientImageIteratorType
 
typedef CoefficientImageType::Pointer CoefficientImagePointer
 
typedef CoefficientImageType::SpacingType CoefficientImageSpacingType
 
typedef BSplineTransformType::ImageType CoefficientImageType
 
typedef AdvancedCombinationTransform< ScalarType, FixedImageDimension > CombinationTransformType
 
typedef SmartPointer< const SelfConstPointer
 
typedef Superclass::CoordinateRepresentationType CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef Superclass::DerivativeValueType DerivativeValueType
 
typedef DilateFilterType::Pointer DilateFilterPointer
 
typedef GrayscaleDilateImageFilter< RigidityImageType, RigidityImageType, StructuringElementTypeDilateFilterType
 
typedef Superclass::FixedImageConstPointer FixedImageConstPointer
 
typedef Superclass::FixedImageMaskPointer FixedImageMaskPointer
 
typedef Superclass::FixedImageMaskType FixedImageMaskType
 
typedef Superclass::FixedImagePixelType FixedImagePixelType
 
typedef Superclass::FixedImagePointer FixedImagePointer
 
typedef Superclass::FixedImageRegionType FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef Superclass::GradientImageFilterPointer GradientImageFilterPointer
 
typedef Superclass::GradientImageFilterType GradientImageFilterType
 
typedef Superclass::GradientImagePointer GradientImagePointer
 
typedef Superclass::GradientImageType GradientImageType
 
typedef Superclass::GradientPixelType GradientPixelType
 
typedef BSplineTransformType::SpacingType GridSpacingType
 
typedef Superclass::ImageSampleContainerPointer ImageSampleContainerPointer
 
typedef Superclass::ImageSampleContainerType ImageSampleContainerType
 
typedef Superclass::InputPointType InputPointType
 
typedef Superclass::InternalMatrixType InternalMatrixType
 
typedef Superclass::InterpolatorPointer InterpolatorPointer
 
typedef Superclass::InterpolatorType InterpolatorType
 
typedef Superclass::JacobianOfSpatialHessianType JacobianOfSpatialHessianType
 
typedef Superclass::JacobianOfSpatialJacobianType JacobianOfSpatialJacobianType
 
typedef Superclass::MeasureType MeasureType
 
typedef Superclass::MovingImageConstPointer MovingImageConstPointer
 
typedef Superclass::MovingImageMaskPointer MovingImageMaskPointer
 
typedef Superclass::MovingImageMaskType MovingImageMaskType
 
typedef Superclass::MovingImagePixelType MovingImagePixelType
 
typedef Superclass::MovingImagePointer MovingImagePointer
 
typedef Superclass::MovingImageType MovingImageType
 
typedef NeighborhoodIterator< CoefficientImageTypeNeighborhoodIteratorType
 
typedef NeighborhoodType::SizeType NeighborhoodSizeType
 
typedef Neighborhood< ScalarType, itkGetStaticConstMacro(FixedImageDimension) > NeighborhoodType
 
typedef NeighborhoodOperatorImageFilter< CoefficientImageType, CoefficientImageTypeNOIFType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef NeighborhoodIteratorType::RadiusType RadiusType
 
typedef Superclass::RealType RealType
 
typedef RigidityImageType::IndexType RigidityImageIndexType
 
typedef ImageRegionIterator< RigidityImageTypeRigidityImageIteratorType
 
typedef RigidityImageType::Pointer RigidityImagePointer
 
typedef RigidityImageType::PointType RigidityImagePointType
 
typedef RigidityImageType::RegionType RigidityImageRegionType
 
typedef CoefficientImageType RigidityImageType
 
typedef RigidityImageType::PixelType RigidityPixelType
 
typedef Superclass::ScalarType ScalarType
 
typedef TransformRigidityPenaltyTerm Self
 
typedef StructuringElementType::RadiusType SERadiusType
 
typedef Superclass::SpatialHessianType SpatialHessianType
 
typedef Superclass::SpatialJacobianType SpatialJacobianType
 
typedef BinaryBallStructuringElement< RigidityPixelType, itkGetStaticConstMacro(FixedImageDimension) > StructuringElementType
 
typedef TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, doubleSuperclass
 
typedef Superclass::TransformJacobianType TransformJacobianType
 
typedef Superclass::TransformParametersType TransformParametersType
 
typedef Superclass::TransformPointer TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef SmartPointer< const SelfConstPointer
 
typedef Superclass::CoordinateRepresentationType CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef Superclass::DerivativeValueType DerivativeValueType
 
typedef Superclass::FixedImageConstPointer FixedImageConstPointer
 
typedef Superclass::FixedImageMaskPointer FixedImageMaskPointer
 
typedef Superclass::FixedImageMaskType FixedImageMaskType
 
typedef Superclass::FixedImagePixelType FixedImagePixelType
 
typedef Superclass::FixedImagePointer FixedImagePointer
 
typedef Superclass::FixedImageRegionType FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef Superclass::GradientImageFilterPointer GradientImageFilterPointer
 
typedef Superclass::GradientImageFilterType GradientImageFilterType
 
typedef Superclass::GradientImagePointer GradientImagePointer
 
typedef Superclass::GradientImageType GradientImageType
 
typedef Superclass::GradientPixelType GradientPixelType
 
typedef Superclass::ImageSampleContainerPointer ImageSampleContainerPointer
 
typedef Superclass::ImageSampleContainerType ImageSampleContainerType
 
typedef Superclass::InputPointType InputPointType
 
typedef TransformType::InternalMatrixType InternalMatrixType
 
typedef Superclass::InterpolatorPointer InterpolatorPointer
 
typedef Superclass::InterpolatorType InterpolatorType
 
typedef TransformType::JacobianOfSpatialHessianType JacobianOfSpatialHessianType
 
typedef TransformType::JacobianOfSpatialJacobianType JacobianOfSpatialJacobianType
 
typedef Superclass::MeasureType MeasureType
 
typedef Superclass::MovingImageConstPointer MovingImageConstPointer
 
typedef Superclass::MovingImageMaskPointer MovingImageMaskPointer
 
typedef Superclass::MovingImageMaskType MovingImageMaskType
 
typedef Superclass::MovingImagePixelType MovingImagePixelType
 
typedef Superclass::MovingImagePointer MovingImagePointer
 
typedef Superclass::MovingImageType MovingImageType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef double ScalarType
 
typedef TransformPenaltyTerm Self
 
typedef TransformType::SpatialHessianType SpatialHessianType
 
typedef TransformType::SpatialJacobianType SpatialJacobianType
 
typedef AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageTypeSuperclass
 
typedef Superclass::ThreaderType ThreaderType
 
typedef Superclass::ThreadInfoType ThreadInfoType
 
typedef Superclass::TransformJacobianType TransformJacobianType
 
typedef Superclass::TransformParametersType TransformParametersType
 
typedef Superclass::AdvancedTransformType TransformType
 
- Public Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
typedef AdvancedTransform< ScalarType, FixedImageDimension, MovingImageDimension > AdvancedTransformType
 
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 1 > BSplineOrder1TransformType
 
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 2 > BSplineOrder2TransformType
 
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 > BSplineOrder3TransformType
 
typedef AdvancedCombinationTransform< ScalarType, FixedImageDimension > CombinationTransformType
 
typedef SmartPointer< const SelfConstPointer
 
typedef Superclass::CoordinateRepresentationType CoordinateRepresentationType
 
typedef Superclass::DerivativeType DerivativeType
 
typedef DerivativeType::ValueType DerivativeValueType
 
typedef Superclass::FixedImageConstPointer FixedImageConstPointer
 
typedef FixedImageLimiterType::OutputType FixedImageLimiterOutputType
 
typedef FixedImageLimiterType::Pointer FixedImageLimiterPointer
 
typedef LimiterFunctionBase< RealType, FixedImageDimension > FixedImageLimiterType
 
typedef Superclass::FixedImageMaskPointer FixedImageMaskPointer
 
typedef Superclass::FixedImageMaskType FixedImageMaskType
 
typedef FixedImageType::PixelType FixedImagePixelType
 
typedef FixedImageType::Pointer FixedImagePointer
 
typedef Superclass::FixedImageRegionType FixedImageRegionType
 
typedef Superclass::FixedImageType FixedImageType
 
typedef Superclass::GradientImageFilterPointer GradientImageFilterPointer
 
typedef Superclass::GradientImageFilterType GradientImageFilterType
 
typedef Superclass::GradientImagePointer GradientImagePointer
 
typedef Superclass::GradientImageType GradientImageType
 
typedef Superclass::GradientPixelType GradientPixelType
 
typedef vnl_sparse_matrix< HessianValueTypeHessianType
 
typedef DerivativeType::ValueType HessianValueType
 
typedef ImageSamplerType::OutputVectorContainerPointer ImageSampleContainerPointer
 
typedef ImageSamplerType::OutputVectorContainerType ImageSampleContainerType
 
typedef ImageSamplerType::Pointer ImageSamplerPointer
 
typedef ImageSamplerBase< FixedImageTypeImageSamplerType
 
typedef Superclass::InputPointType InputPointType
 
typedef Superclass::InterpolatorPointer InterpolatorPointer
 
typedef Superclass::InterpolatorType InterpolatorType
 
typedef Superclass::MeasureType MeasureType
 
typedef Superclass::MovingImageConstPointer MovingImageConstPointer
 
typedef FixedArray< double, Self::MovingImageDimension > MovingImageDerivativeScalesType
 
typedef MovingImageLimiterType::OutputType MovingImageLimiterOutputType
 
typedef MovingImageLimiterType::Pointer MovingImageLimiterPointer
 
typedef LimiterFunctionBase< RealType, MovingImageDimension > MovingImageLimiterType
 
typedef Superclass::MovingImageMaskPointer MovingImageMaskPointer
 
typedef Superclass::MovingImageMaskType MovingImageMaskType
 
typedef Superclass::MovingImagePixelType MovingImagePixelType
 
typedef MovingImageType::Pointer MovingImagePointer
 
typedef MovingImageType::RegionType MovingImageRegionType
 
typedef Superclass::MovingImageType MovingImageType
 
typedef AdvancedTransformType::NumberOfParametersType NumberOfParametersType
 
typedef Superclass::OutputPointType OutputPointType
 
typedef Superclass::ParametersType ParametersType
 
typedef SmartPointer< SelfPointer
 
typedef Superclass::RealType RealType
 
typedef TransformType::ScalarType ScalarType
 
typedef AdvancedImageToImageMetric Self
 
typedef ImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageTypeSuperclass
 
typedef itk::MultiThreader ThreaderType
 
typedef ThreaderType::ThreadInfoStruct ThreadInfoType
 
typedef Superclass::TransformJacobianType TransformJacobianType
 
typedef Superclass::TransformParametersType TransformParametersType
 
typedef Superclass::TransformPointer TransformPointer
 
typedef Superclass::TransformType TransformType
 
- Public Types inherited from elastix::MetricBase< TElastix >
typedef itk::AdvancedImageToImageMetric< FixedImageType, MovingImageTypeAdvancedMetricType
 
typedef Superclass::ConfigurationPointer ConfigurationPointer
 
typedef Superclass::ConfigurationType ConfigurationType
 
typedef ITKBaseType::ParametersValueType CoordinateRepresentationType
 
typedef Superclass::ElastixPointer ElastixPointer
 
typedef Superclass::ElastixType ElastixType
 
typedef ElastixType::FixedImageType FixedImageType
 
typedef itk::PointSet< CoordinateRepresentationType, FixedImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, FixedImageDimension, FixedImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > FixedPointSetType
 
typedef FixedImageType::PointType FixedPointType
 
typedef FixedPointType::ValueType FixedPointValueType
 
typedef AdvancedMetricType::ImageSamplerType ImageSamplerBaseType
 
typedef itk::SingleValuedCostFunction ITKBaseType
 
typedef ITKBaseType::MeasureType MeasureType
 
typedef AdvancedMetricType::MovingImageDerivativeScalesType MovingImageDerivativeScalesType
 
typedef ElastixType::MovingImageType MovingImageType
 
typedef itk::PointSet< CoordinateRepresentationType, MovingImageDimension, itk::DefaultStaticMeshTraits< CoordinateRepresentationType, MovingImageDimension, MovingImageDimension, CoordinateRepresentationType, CoordinateRepresentationType, CoordinateRepresentationType > > MovingPointSetType
 
typedef MovingImageType::PointType MovingPointType
 
typedef MovingPointType::ValueType MovingPointValueType
 
typedef Superclass::RegistrationPointer RegistrationPointer
 
typedef Superclass::RegistrationType RegistrationType
 
typedef MetricBase Self
 
typedef BaseComponentSE< TElastix > Superclass
 
- Public Types inherited from elastix::BaseComponentSE< TElastix >
typedef ElastixType::ConfigurationPointer ConfigurationPointer
 
typedef ElastixType::ConfigurationType ConfigurationType
 
typedef ElastixType::Pointer ElastixPointer
 
typedef TElastix ElastixType
 
typedef RegistrationTypeRegistrationPointer
 
typedef ElastixType::RegistrationBaseType RegistrationType
 
typedef BaseComponentSE Self
 
typedef BaseComponent Superclass
 

Public Member Functions

virtual void AfterEachIteration (void)
 
virtual void BeforeEachResolution (void)
 
virtual void BeforeRegistration (void)
 
 elxClassNameMacro ("TransformRigidityPenalty")
 
virtual const char * GetClassName () const
 
virtual void Initialize (void) throw ( itk::ExceptionObject )
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SelectNewSamples (void)
 
- Public Member Functions inherited from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
virtual void BeforeThreadedGetValueAndDerivative (const TransformParametersType &parameters) const
 
void CheckUseAndCalculationBooleans (void)
 
void FillRigidityCoefficientImage (const ParametersType &parameters) const
 
virtual void GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const
 
virtual const MeasureTypeGetLinearityConditionGradientMagnitude ()
 
virtual const MeasureTypeGetLinearityConditionValue ()
 
virtual ScalarType GetLinearityConditionWeight ()
 
virtual const MeasureTypeGetOrthonormalityConditionGradientMagnitude ()
 
virtual const MeasureTypeGetOrthonormalityConditionValue ()
 
virtual ScalarType GetOrthonormalityConditionWeight ()
 
virtual const MeasureTypeGetPropernessConditionGradientMagnitude ()
 
virtual const MeasureTypeGetPropernessConditionValue ()
 
virtual ScalarType GetPropernessConditionWeight ()
 
virtual MeasureType GetValue (const ParametersType &parameters) const
 
virtual void GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (ImageDimension, unsigned int, FixedImageType::ImageDimension)
 
virtual void SetBSplineTransform (BSplineTransformType *_arg)
 
virtual void SetCalculateLinearityCondition (bool _arg)
 
virtual void SetCalculateOrthonormalityCondition (bool _arg)
 
virtual void SetCalculatePropernessCondition (bool _arg)
 
virtual void SetDilateRigidityImages (bool _arg)
 
virtual void SetDilationRadiusMultiplier (CoordinateRepresentationType _arg)
 
virtual void SetFixedRigidityImage (RigidityImageType *_arg)
 
virtual void SetLinearityConditionWeight (ScalarType _arg)
 
virtual void SetMovingRigidityImage (RigidityImageType *_arg)
 
virtual void SetOrthonormalityConditionWeight (ScalarType _arg)
 
virtual void SetPropernessConditionWeight (ScalarType _arg)
 
virtual void SetUseFixedRigidityImage (bool _arg)
 
virtual void SetUseLinearityCondition (bool _arg)
 
virtual void SetUseMovingRigidityImage (bool _arg)
 
virtual void SetUseOrthonormalityCondition (bool _arg)
 
virtual void SetUsePropernessCondition (bool _arg)
 
- Public Member Functions inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
- Public Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
virtual const FixedImageLimiterTypeGetFixedImageLimiter ()
 
virtual double GetFixedLimitRangeRatio () const
 
virtual ImageSamplerTypeGetImageSampler (void) const
 
virtual const MovingImageDerivativeScalesTypeGetMovingImageDerivativeScales ()
 
virtual const MovingImageLimiterTypeGetMovingImageLimiter ()
 
virtual double GetMovingLimitRangeRatio () const
 
virtual double GetRequiredRatioOfValidSamples () const
 
virtual bool GetScaleGradientWithRespectToMovingImageOrientation () const
 
virtual void GetSelfHessian (const TransformParametersType &parameters, HessianType &H) const
 
const AdvancedTransformTypeGetTransform (void) const
 
virtual bool GetUseFixedImageLimiter () const
 
virtual bool GetUseImageSampler () const
 
virtual const boolGetUseMetricSingleThreaded ()
 
virtual bool GetUseMovingImageDerivativeScales () const
 
virtual bool GetUseMovingImageLimiter () const
 
virtual const boolGetUseMultiThread ()
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, MetricBase< TElastix >::FixedImageType::ImageDimension)
 
virtual void SetFixedImageLimiter (FixedImageLimiterType *_arg)
 
virtual void SetFixedLimitRangeRatio (double _arg)
 
virtual void SetImageSampler (ImageSamplerType *_arg)
 
virtual void SetMovingImageDerivativeScales (MovingImageDerivativeScalesType _arg)
 
virtual void SetMovingImageLimiter (MovingImageLimiterType *_arg)
 
virtual void SetMovingLimitRangeRatio (double _arg)
 
virtual void SetNumberOfThreads (ThreadIdType numberOfThreads)
 
virtual void SetRequiredRatioOfValidSamples (double _arg)
 
virtual void SetScaleGradientWithRespectToMovingImageOrientation (bool _arg)
 
virtual void SetTransform (AdvancedTransformType *arg)
 
virtual void SetUseMetricSingleThreaded (bool _arg)
 
virtual void SetUseMovingImageDerivativeScales (bool _arg)
 
virtual void SetUseMultiThread (bool _arg)
 
virtual void UseMetricSingleThreadedOff ()
 
virtual void UseMetricSingleThreadedOn ()
 
virtual void UseMultiThreadOff ()
 
virtual void UseMultiThreadOn ()
 
- Public Member Functions inherited from elastix::MetricBase< TElastix >
virtual void AfterEachIterationBase (void)
 
virtual void BeforeEachResolutionBase (void)
 
virtual ImageSamplerBaseTypeGetAdvancedMetricImageSampler (void) const
 
virtual bool GetAdvancedMetricUseImageSampler (void) const
 
virtual ITKBaseTypeGetAsITKBaseType (void)
 
virtual const ITKBaseTypeGetAsITKBaseType (void) const
 
virtual MeasureType GetCurrentExactMetricValue (void) const
 
virtual bool GetShowExactMetricValue (void) const
 
 itkStaticConstMacro (FixedImageDimension, unsigned int, FixedImageType::ImageDimension)
 
 itkStaticConstMacro (MovingImageDimension, unsigned int, MovingImageType::ImageDimension)
 
virtual void SetAdvancedMetricImageSampler (ImageSamplerBaseType *sampler)
 
- Public Member Functions inherited from elastix::BaseComponentSE< TElastix >
virtual ConfigurationTypeGetConfiguration (void) const
 
virtual ElastixTypeGetElastix (void) const
 
virtual RegistrationPointer GetRegistration (void) const
 
virtual void SetConfiguration (ConfigurationType *_arg)
 
virtual void SetElastix (ElastixType *_arg)
 
- Public Member Functions inherited from elastix::BaseComponent
virtual void AfterEachResolution (void)
 
virtual void AfterEachResolutionBase (void)
 
virtual void AfterRegistration (void)
 
virtual void AfterRegistrationBase (void)
 
virtual int BeforeAll (void)
 
virtual int BeforeAllBase (void)
 
virtual void BeforeRegistrationBase (void)
 
std::string ConvertSecondsToDHMS (const double totalSeconds, const unsigned int precision) const
 
virtual const char * elxGetClassName (void) const
 
virtual const char * GetComponentLabel (void) const
 
virtual void SetComponentLabel (const char *label, unsigned int idx)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
static Pointer New ()
 

Protected Member Functions

 TransformRigidityPenalty ()
 
virtual ~TransformRigidityPenalty ()
 
- Protected Member Functions inherited from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
void PrintSelf (std::ostream &os, Indent indent) const
 
 TransformRigidityPenaltyTerm ()
 
virtual ~TransformRigidityPenaltyTerm ()
 
- Protected Member Functions inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
virtual bool CheckForBSplineTransform (BSplineTransformPointer &bspline) const
 
 TransformPenaltyTerm ()
 
virtual ~TransformPenaltyTerm ()
 
- Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
 AdvancedImageToImageMetric ()
 
virtual void AfterThreadedGetValueAndDerivative (MeasureType &value, DerivativeType &derivative) const
 
virtual void CheckForAdvancedTransform (void)
 
virtual void CheckForBSplineInterpolator (void)
 
virtual void CheckForBSplineTransform (void)
 
virtual void CheckNumberOfSamples (unsigned long wanted, unsigned long found) const
 
virtual void ComputeFixedImageExtrema (const FixedImageType *image, const FixedImageRegionType &region)
 
virtual void ComputeMovingImageExtrema (const MovingImageType *image, const MovingImageRegionType &region)
 
virtual bool EvaluateMovingImageValueAndDerivative (const MovingImagePointType &mappedPoint, RealType &movingImageValue, MovingImageDerivativeType *gradient) const
 
virtual bool EvaluateTransformJacobian (const FixedImagePointType &fixedImagePoint, TransformJacobianType &jacobian, NonZeroJacobianIndicesType &nzji) const
 
virtual void EvaluateTransformJacobianInnerProduct (const TransformJacobianType &jacobian, const MovingImageDerivativeType &movingImageDerivative, DerivativeType &imageJacobian) const
 
virtual void InitializeImageSampler (void) throw ( ExceptionObject )
 
virtual void InitializeLimiters (void)
 
virtual void InitializeThreadingParameters (void) const
 
virtual bool IsInsideMovingMask (const MovingImagePointType &point) const
 
 itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedGetValueAndDerivativePerThreadStruct, AlignedGetValueAndDerivativePerThreadStruct)
 
 itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, GetValueAndDerivativePerThreadStruct, PaddedGetValueAndDerivativePerThreadStruct)
 
void LaunchGetValueAndDerivativeThreaderCallback (void) const
 
void PrintSelf (std::ostream &os, Indent indent) const
 
virtual void SetUseFixedImageLimiter (bool _arg)
 
virtual void SetUseImageSampler (bool _arg)
 
virtual void SetUseMovingImageLimiter (bool _arg)
 
virtual void ThreadedGetValueAndDerivative (ThreadIdType threadID)
 
virtual bool TransformPoint (const FixedImagePointType &fixedImagePoint, MovingImagePointType &mappedPoint) const
 
virtual ~AdvancedImageToImageMetric ()
 
- Protected Member Functions inherited from elastix::MetricBase< TElastix >
virtual MeasureType GetExactValue (const ParametersType &parameters)
 
 MetricBase ()
 
virtual ~MetricBase ()
 
- Protected Member Functions inherited from elastix::BaseComponentSE< TElastix >
 BaseComponentSE ()
 
virtual ~BaseComponentSE ()
 
- Protected Member Functions inherited from elastix::BaseComponent
 BaseComponent ()
 
virtual ~BaseComponent ()
 

Private Member Functions

void operator= (const Self &)
 
 TransformRigidityPenalty (const Self &)
 

Additional Inherited Members

- Protected Types inherited from itk::TransformPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >
typedef BSplineTransformType::Pointer BSplineTransformPointer
 
typedef AdvancedBSplineDeformableTransform< ScalarType, FixedImageDimension, 3 > BSplineTransformType
 
typedef AdvancedCombinationTransform< ScalarType, FixedImageDimension > CombinationTransformType
 
typedef Superclass::FixedImageIndexType FixedImageIndexType
 
typedef Superclass::FixedImageIndexValueType FixedImageIndexValueType
 
typedef Superclass::FixedImagePointType FixedImagePointType
 
typedef Superclass::MovingImageContinuousIndexType MovingImageContinuousIndexType
 
typedef Superclass::MovingImageIndexType MovingImageIndexType
 
typedef Superclass::MovingImagePointType MovingImagePointType
 
typedef Superclass::NonZeroJacobianIndicesType NonZeroJacobianIndicesType
 
- Protected Types inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
typedef BSplineInterpolatorFloatType::Pointer BSplineInterpolatorFloatPointer
 
typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, floatBSplineInterpolatorFloatType
 
typedef BSplineInterpolatorType::Pointer BSplineInterpolatorPointer
 
typedef BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, doubleBSplineInterpolatorType
 
typedef CentralDifferenceGradientFilterType::Pointer CentralDifferenceGradientFilterPointer
 
typedef GradientImageFilter< MovingImageType, RealType, RealTypeCentralDifferenceGradientFilterType
 
typedef FixedImageType::IndexType FixedImageIndexType
 
typedef FixedImageIndexType::IndexValueType FixedImageIndexValueType
 
typedef TransformType::InputPointType FixedImagePointType
 
typedef LinearInterpolatorType::Pointer LinearInterpolatorPointer
 
typedef AdvancedLinearInterpolateImageFunction< MovingImageType, CoordinateRepresentationTypeLinearInterpolatorType
 
typedef InterpolatorType::ContinuousIndexType MovingImageContinuousIndexType
 
typedef BSplineInterpolatorType::CovariantVectorType MovingImageDerivativeType
 
typedef MovingImageType::IndexType MovingImageIndexType
 
typedef TransformType::OutputPointType MovingImagePointType
 
typedef AdvancedTransformType::NonZeroJacobianIndicesType NonZeroJacobianIndicesType
 
typedef ReducedBSplineInterpolatorType::Pointer ReducedBSplineInterpolatorPointer
 
typedef ReducedDimensionBSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType, doubleReducedBSplineInterpolatorType
 
- Protected Types inherited from elastix::MetricBase< TElastix >
typedef ExactMetricImageSamplerType::Pointer ExactMetricImageSamplerPointer
 
typedef itk::ImageGridSampler< FixedImageTypeExactMetricImageSamplerType
 
typedef ExactMetricImageSamplerType::SampleGridSpacingType ExactMetricSampleGridSpacingType
 
typedef ITKBaseType::ParametersType ParametersType
 
- Static Protected Member Functions inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
static ITK_THREAD_RETURN_TYPE AccumulateDerivativesThreaderCallback (void *arg)
 
static ITK_THREAD_RETURN_TYPE GetValueAndDerivativeThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::AdvancedImageToImageMetric< MetricBase< TElastix >::FixedImageType, MetricBase< TElastix >::FixedImageType >
AdvancedTransformType::Pointer m_AdvancedTransform
 
BSplineInterpolatorPointer m_BSplineInterpolator
 
BSplineInterpolatorFloatPointer m_BSplineInterpolatorFloat
 
CentralDifferenceGradientFilterPointer m_CentralDifferenceGradientFilter
 
FixedImageLimiterPointer m_FixedImageLimiter
 
FixedImageLimiterOutputType m_FixedImageMaxLimit
 
FixedImageLimiterOutputType m_FixedImageMinLimit
 
FixedImagePixelType m_FixedImageTrueMax
 
FixedImagePixelType m_FixedImageTrueMin
 
AlignedGetValueAndDerivativePerThreadStruct * m_GetValueAndDerivativePerThreadVariables
 
ThreadIdType m_GetValueAndDerivativePerThreadVariablesSize
 
ImageSamplerPointer m_ImageSampler
 
bool m_InterpolatorIsBSpline
 
bool m_InterpolatorIsBSplineFloat
 
bool m_InterpolatorIsLinear
 
bool m_InterpolatorIsReducedBSpline
 
LinearInterpolatorPointer m_LinearInterpolator
 
MovingImageLimiterPointer m_MovingImageLimiter
 
MovingImageLimiterOutputType m_MovingImageMaxLimit
 
MovingImageLimiterOutputType m_MovingImageMinLimit
 
MovingImagePixelType m_MovingImageTrueMax
 
MovingImagePixelType m_MovingImageTrueMin
 
ReducedBSplineInterpolatorPointer m_ReducedBSplineInterpolator
 
MultiThreaderParameterType m_ThreaderMetricParameters
 
bool m_TransformIsAdvanced
 
bool m_TransformIsBSpline
 
bool m_UseMetricSingleThreaded
 
bool m_UseMultiThread
 
bool m_UseOpenMP
 
- Protected Attributes inherited from elastix::MetricBase< TElastix >
MeasureType m_CurrentExactMetricValue
 
ExactMetricSampleGridSpacingType m_ExactMetricSampleGridSpacing
 
ExactMetricImageSamplerPointer m_ExactMetricSampler
 
bool m_ShowExactMetricValue
 
- Protected Attributes inherited from elastix::BaseComponentSE< TElastix >
ConfigurationPointer m_Configuration
 
ElastixPointer m_Elastix
 
RegistrationPointer m_Registration
 

Member Typedef Documentation

Definition at line 180 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 194 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 193 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef itk::SmartPointer< const Self > elastix::TransformRigidityPenalty< TElastix >::ConstPointer

Definition at line 126 of file elxTransformRigidityPenaltyTerm.h.

Typedefs from the superclass.

Definition at line 141 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::DerivativeType elastix::TransformRigidityPenalty< TElastix >::DerivativeType

Definition at line 167 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass2::ElastixPointer elastix::TransformRigidityPenalty< TElastix >::ElastixPointer

Definition at line 192 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass2::ElastixType elastix::TransformRigidityPenalty< TElastix >::ElastixType

Typedef's inherited from elastix.

Definition at line 191 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 146 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 177 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 175 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 163 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 162 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 169 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 147 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::FixedImageType elastix::TransformRigidityPenalty< TElastix >::FixedImageType

Definition at line 145 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 161 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 160 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 159 of file elxTransformRigidityPenaltyTerm.h.

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Definition at line 174 of file elxTransformRigidityPenaltyTerm.h.

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Definition at line 172 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 171 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::InputPointType elastix::TransformRigidityPenalty< TElastix >::InputPointType

Definition at line 150 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 155 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 154 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass2::ITKBaseType elastix::TransformRigidityPenalty< TElastix >::ITKBaseType

Definition at line 197 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::MeasureType elastix::TransformRigidityPenalty< TElastix >::MeasureType

Definition at line 166 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 144 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 178 of file elxTransformRigidityPenaltyTerm.h.

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Definition at line 143 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 170 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::MovingImageType elastix::TransformRigidityPenalty< TElastix >::MovingImageType

Definition at line 142 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::OutputPointType elastix::TransformRigidityPenalty< TElastix >::OutputPointType

Definition at line 151 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::ParametersType elastix::TransformRigidityPenalty< TElastix >::ParametersType

Definition at line 168 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef itk::SmartPointer< Self > elastix::TransformRigidityPenalty< TElastix >::Pointer

Definition at line 125 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::RealType elastix::TransformRigidityPenalty< TElastix >::RealType

Definition at line 156 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 196 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 195 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef TransformRigidityPenalty elastix::TransformRigidityPenalty< TElastix >::Self

Standard ITK-stuff.

Definition at line 120 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef itk::TransformRigidityPenaltyTerm< typename MetricBase< TElastix >::FixedImageType, double > elastix::TransformRigidityPenalty< TElastix >::Superclass1

Definition at line 123 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef MetricBase< TElastix > elastix::TransformRigidityPenalty< TElastix >::Superclass2

Definition at line 124 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 153 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 152 of file elxTransformRigidityPenaltyTerm.h.

Definition at line 149 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
typedef Superclass1::TransformType elastix::TransformRigidityPenalty< TElastix >::TransformType

Definition at line 148 of file elxTransformRigidityPenaltyTerm.h.

Constructor & Destructor Documentation

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::TransformRigidityPenalty ( )
inlineprotected

The constructor.

Definition at line 233 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
virtual elastix::TransformRigidityPenalty< TElastix >::~TransformRigidityPenalty ( )
inlineprotectedvirtual

The destructor.

Definition at line 236 of file elxTransformRigidityPenaltyTerm.h.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::TransformRigidityPenalty ( const Self )
private

The private constructor.

Member Function Documentation

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::AfterEachIteration ( void  )
virtual

Do some things after each iteration:

  • Print the OC, PC, LC parts of the rigidity term.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::BeforeEachResolution ( void  )
virtual

Do some things before each resolution:

  • Read all parameters.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::BeforeRegistration ( void  )
virtual

Do some things before registration:

  • Read the fixed rigidity image.
  • Read the moving rigidity image.
  • Setup some extra target cells.

Reimplemented from elastix::BaseComponent.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::elxClassNameMacro ( "TransformRigidityPenalty< TElastix >"  )

Name of this class. Use this name in the parameter file to select this specific metric.
example: (Metric "TransformRigidityPenalty")

template<class TElastix >
virtual const char* elastix::TransformRigidityPenalty< TElastix >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from elastix::MetricBase< TElastix >.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::Initialize ( void  )
throw (itk::ExceptionObject
)
virtual

Sets up a timer to measure the initialization time and calls the Superclass' implementation.

Reimplemented from itk::TransformRigidityPenaltyTerm< MetricBase< TElastix >::FixedImageType, double >.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::itkStaticConstMacro ( FixedImageDimension  ,
unsigned  int,
FixedImageType::ImageDimension   
)

The fixed image dimension.

template<class TElastix >
elastix::TransformRigidityPenalty< TElastix >::itkStaticConstMacro ( MovingImageDimension  ,
unsigned  int,
MovingImageType::ImageDimension   
)

The moving image dimension.

template<class TElastix >
static Pointer elastix::TransformRigidityPenalty< TElastix >::New ( )
static

Method for creation through the object factory.

template<class TElastix >
void elastix::TransformRigidityPenalty< TElastix >::operator= ( const Self )
private

The private copy constructor.

template<class TElastix >
virtual void elastix::TransformRigidityPenalty< TElastix >::SelectNewSamples ( void  )
inlinevirtual

This metric is advanced (so it has a sampling possibility), but it purposely does not use samplers. The MetricBase class, however, issues a warning if this is the case, so we overwrite that function.

Reimplemented from elastix::MetricBase< TElastix >.

Definition at line 228 of file elxTransformRigidityPenaltyTerm.h.



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