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itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType > Class Template Reference

#include <itkTransformToDeterminantOfSpatialJacobianSource.h>

Detailed Description

template<class TOutputImage, class TTransformPrecisionType = double>
class itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >

Generate the spatial Jacobian from a coordinate transform.

This class was inspired on an the itkTransformToDeformationFieldSource class.

Output information (spacing, size and direction) for the output image should be set. This information has the normal defaults of unit spacing, zero origin and identity direction. Optionally, the output information can be obtained from a reference image. If the reference image is provided and UseReferenceImage is On, then the spacing, origin and direction of the reference image will be used.

Since this filter produces an image which is a different size than its input, it needs to override several of the methods defined in ProcessObject in order to properly manage the pipeline execution model. In particular, this filter overrides ProcessObject::GenerateInputRequestedRegion() and ProcessObject::GenerateOutputInformation().

This filter is implemented as a multithreaded filter. It provides a ThreadedGenerateData() method for its implementation.

Author
Marius Staring, Leiden University Medical Center, The Netherlands.

This class was taken from the Insight Journal paper: http://hdl.handle.net/?/?

Definition at line 75 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

Inheritance diagram for itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >:
Inheritance graph
[legend]

Public Types

typedef SmartPointer< const SelfConstPointer
 
typedef OutputImageType::DirectionType DirectionType
 
typedef ImageBase< itkGetStaticConstMacro(ImageDimension) > ImageBaseType
 
typedef OutputImageType::IndexType IndexType
 
typedef OutputImageType::PointType OriginType
 
typedef OutputImageType::ConstPointer OutputImageConstPointer
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TOutputImage OutputImageType
 
typedef OutputImageType::PixelType PixelType
 
typedef SmartPointer< SelfPointer
 
typedef OutputImageType::PointType PointType
 
typedef OutputImageType::RegionType RegionType
 
typedef TransformToDeterminantOfSpatialJacobianSource Self
 
typedef RegionType::SizeType SizeType
 
typedef OutputImageType::SpacingType SpacingType
 
typedef TransformType::SpatialJacobianType SpatialJacobianType
 
typedef ImageSource< TOutputImage > Superclass
 
typedef TransformType::ConstPointer TransformPointerType
 
typedef AdvancedTransform< TTransformPrecisionType, itkGetStaticConstMacro(ImageDimension), itkGetStaticConstMacro(ImageDimension) > TransformType
 

Public Member Functions

virtual void BeforeThreadedGenerateData (void)
 
virtual void GenerateOutputInformation (void)
 
virtual const char * GetClassName () const
 
unsigned long GetMTime (void) const
 
virtual const DirectionTypeGetOutputDirection ()
 
virtual const IndexTypeGetOutputIndex ()
 
virtual const OriginTypeGetOutputOrigin ()
 
virtual const OutputImageRegionTypeGetOutputRegion ()
 
virtual const SizeTypeGetOutputSize ()
 
virtual const SpacingTypeGetOutputSpacing ()
 
virtual const TransformTypeGetTransform ()
 
 itkStaticConstMacro (ImageDimension, unsigned int, TOutputImage::ImageDimension)
 
virtual void SetOutputDirection (DirectionType _arg)
 
virtual void SetOutputIndex (const IndexType &index)
 
virtual void SetOutputOrigin (OriginType _arg)
 
virtual void SetOutputOrigin (const double *values)
 
void SetOutputParametersFromImage (const ImageBaseType *image)
 
virtual void SetOutputRegion (OutputImageRegionType _arg)
 
virtual void SetOutputSize (const SizeType &size)
 
virtual void SetOutputSpacing (SpacingType _arg)
 
virtual void SetOutputSpacing (const double *values)
 
virtual void SetTransform (const TransformType *_arg)
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

void LinearGenerateData (void)
 
void NonlinearThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
void PrintSelf (std::ostream &os, Indent indent) const
 
void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
 TransformToDeterminantOfSpatialJacobianSource ()
 
 ~TransformToDeterminantOfSpatialJacobianSource ()
 

Private Member Functions

void operator= (const Self &)
 
 TransformToDeterminantOfSpatialJacobianSource (const Self &)
 

Private Attributes

DirectionType m_OutputDirection
 
OriginType m_OutputOrigin
 
RegionType m_OutputRegion
 
SpacingType m_OutputSpacing
 
TransformPointerType m_Transform
 

Member Typedef Documentation

template<class TOutputImage , class TTransformPrecisionType = double>
typedef SmartPointer< const Self > itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::ConstPointer
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::DirectionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::DirectionType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef ImageBase< itkGetStaticConstMacro( ImageDimension ) > itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::ImageBaseType

Typedefs for base image.

Definition at line 120 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::IndexType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::IndexType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::PointType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OriginType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::ConstPointer itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImageConstPointer
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::Pointer itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImagePointer
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::RegionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImageRegionType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef TOutputImage itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::OutputImageType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::PixelType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::PixelType

Typedefs for output image.

Definition at line 109 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

template<class TOutputImage , class TTransformPrecisionType = double>
typedef SmartPointer< Self > itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::Pointer
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::PointType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::PointType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::RegionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::RegionType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef TransformToDeterminantOfSpatialJacobianSource itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::Self

Standard class typedefs.

Definition at line 81 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

template<class TOutputImage , class TTransformPrecisionType = double>
typedef RegionType::SizeType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SizeType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef OutputImageType::SpacingType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SpacingType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef TransformType::SpatialJacobianType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SpatialJacobianType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef ImageSource< TOutputImage > itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::Superclass
template<class TOutputImage , class TTransformPrecisionType = double>
typedef TransformType::ConstPointer itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::TransformPointerType
template<class TOutputImage , class TTransformPrecisionType = double>
typedef AdvancedTransform< TTransformPrecisionType, itkGetStaticConstMacro( ImageDimension ), itkGetStaticConstMacro( ImageDimension ) > itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::TransformType

Typedefs for transform.

Definition at line 104 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

Constructor & Destructor Documentation

template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::TransformToDeterminantOfSpatialJacobianSource ( )
protected
template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::~TransformToDeterminantOfSpatialJacobianSource ( )
inlineprotected
template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::TransformToDeterminantOfSpatialJacobianSource ( const Self )
private

Member Function Documentation

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::BeforeThreadedGenerateData ( void  )
virtual

Checking if transform is set. In case of linear transformations, the LinearGenerateData is called.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GenerateOutputInformation ( void  )
virtual

TransformToDeterminantOfSpatialJacobianSource produces a floating value image.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const char* itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetClassName ( ) const
virtual

Run-time type information (and related methods).

template<class TOutputImage , class TTransformPrecisionType = double>
unsigned long itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetMTime ( void  ) const

Compute the Modified Time based on changes to the components.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const DirectionType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputDirection ( )
virtual
template<class TOutputImage , class TTransformPrecisionType = double>
virtual const IndexType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputIndex ( )
virtual

Get the start index of the output largest possible region.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const OriginType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputOrigin ( )
virtual

Get the output image origin.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const OutputImageRegionType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputRegion ( )
virtual

Get the region of the output image.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const SizeType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputSize ( )
virtual

Get the size of the output image.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const SpacingType& itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetOutputSpacing ( )
virtual

Get the output image spacing.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual const TransformType* itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::GetTransform ( )
virtual

Get a pointer to the coordinate transform.

template<class TOutputImage , class TTransformPrecisionType = double>
itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::itkStaticConstMacro ( ImageDimension  ,
unsigned  int,
TOutputImage::ImageDimension   
)

Number of dimensions.

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::LinearGenerateData ( void  )
protected

Faster implementation for resampling that works for with linear transformation types. Unthreaded.

template<class TOutputImage , class TTransformPrecisionType = double>
static Pointer itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::New ( )
static

Method for creation through the object factory.

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::NonlinearThreadedGenerateData ( const OutputImageRegionType outputRegionForThread,
ThreadIdType  threadId 
)
protected

Default implementation for resampling that works for any transformation type.

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::operator= ( const Self )
private
template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protected
template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputDirection ( DirectionType  _arg)
virtual

Set the output direction cosine matrix.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputIndex ( const IndexType index)
virtual

Set the start index of the output largest possible region. The default is an index of all zeros.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputOrigin ( OriginType  _arg)
virtual

Set the output image origin.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputOrigin ( const double values)
virtual
template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputParametersFromImage ( const ImageBaseType image)

Helper method to set the output parameters based on this image

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputRegion ( OutputImageRegionType  _arg)
virtual

Set the region of the output image.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputSize ( const SizeType size)
virtual

Set the size of the output image.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputSpacing ( SpacingType  _arg)
virtual

Set the output image spacing.

template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetOutputSpacing ( const double values)
virtual
template<class TOutputImage , class TTransformPrecisionType = double>
virtual void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::SetTransform ( const TransformType _arg)
virtual

Set the coordinate transformation. Set the coordinate transform to use for resampling. Note that this must be in physical coordinates and it is the output-to-input transform, NOT the input-to-output transform that you might naively expect. By default the filter uses an Identity transform. You must provide a different transform here, before attempting to run the filter, if you do not want to use the default Identity transform.

template<class TOutputImage , class TTransformPrecisionType = double>
void itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::ThreadedGenerateData ( const OutputImageRegionType outputRegionForThread,
ThreadIdType  threadId 
)
protected

TransformToDeterminantOfSpatialJacobianSource can be implemented as a multithreaded filter.

Field Documentation

template<class TOutputImage , class TTransformPrecisionType = double>
DirectionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputDirection
private
template<class TOutputImage , class TTransformPrecisionType = double>
OriginType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputOrigin
private
template<class TOutputImage , class TTransformPrecisionType = double>
RegionType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputRegion
private

Member variables.

Definition at line 215 of file itkTransformToDeterminantOfSpatialJacobianSource.h.

template<class TOutputImage , class TTransformPrecisionType = double>
SpacingType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_OutputSpacing
private
template<class TOutputImage , class TTransformPrecisionType = double>
TransformPointerType itk::TransformToDeterminantOfSpatialJacobianSource< TOutputImage, TTransformPrecisionType >::m_Transform
private


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