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Publications

 
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Papers in international journals | Conference proceedings | Abstracts | Theses
 

Papers in international journals

  • R. Shahzad, Q. Tao, O. Dzyubachyk, M. Staring, B.P.F. Lelieveldt and R.J. van der Geest, "Fully-Automatic Left Ventricular Segmentation from Long-Axis Cardiac Cine MR Scans," Medical Image Analysis, in press. click here
  • Z. Sun, M. van der Giessen, B.P.F. Lelieveldt and M. Staring, "Detection of conversion from mild cognitive impairment to Alzheimer's disease using longitudinal brain MRI," Frontiers in Neuroinformatics, vol. 11, pp. 16, February 2017. click here
  • O. Dzyubachyk, M. Staring, M. Reijnierse, B.P.F. Lelieveldt and R.J. van der Geest, "Inter-Station Intensity Standardization for Whole-Body MR Data," Magnetic Resonance in Medicine, vol. 77, no. 1, pp. 422 - 433, January 2017. click here
  • M.A. Viergever, J.B.A. Maintz, S. Klein, K. Murphy, M. Staring and J.P.W. Pluim, "A survey of medical image registration - under review," Medical Image Analysis, vol. 33, pp. 140 - 144, October 2016. click here
  • C. Xiao, B.C. Stoel, M.E. Bakker, Y. Peng, J. Stolk and M. Staring, "Pulmonary Fissure Detection in CT Images Using a Derivative of Stick Filter," IEEE Transactions on Medical Imaging, vol. 35, no. 6, pp. 1488 - 1500, June 2016. click here
  • G. Saygili, M. Staring and E.A. Hendriks, "Confidence Estimation for Medical Image Registration Based On Stereo Confidences," IEEE Transactions on Medical Imaging, vol. 35, no. 2, pp. 539 - 549, February 2016. click here
  • Y. Qiao, B. van Lew, B.P.F. Lelieveldt and M. Staring, "Fast Automatic Step Size Estimation for Gradient Descent Optimization of Image Registration," IEEE Transactions on Medical Imaging, vol. 35, no. 2, pp. 391 - 403, February 2016. click here
  • L. Hammelrath, S. Škokić, A. Khmelinskii, A. Hess, N. van der Knaap, M. Staring, B.P.F. Lelieveldt, D. Wiedermann and M. Hoehn, "Morphological maturation of the mouse brain: An in vivo MRI and histology investigation," NeuroImage, vol. 125, no. 15, pp. 144 - 152, January 2016. click here
  • R. Shahzad, O. Dzyubachyk, M. Staring, J. Kullberg, L. Johansson, H. Ahlström, B.P.F. Lelieveldt and R.J. van der Geest, "Automated Extraction and Labelling of the Arterial Tree from Whole-Body MRA Data," Medical Image Analysis, vol. 24, no. 1, pp. 28 - 40, August 2015. click here
  • M.K. Ninaber, J. Stolk, J. Smit, E.J. Le Roy, L.J.M. Kroft, M.E. Bakker, J.K. de Vries Bouwstra, A.A. Schouffoer, M. Staring and B.C. Stoel, "Lung Structure And Function Relation In Systemic Sclerosis: Application Of Lung Densitometry," European Journal of Radiology, vol. 84, no. 5, pp. 975 - 979, May 2015. click here
  • B.C. Stoel, H.A. Marquering, M. Staring, L.F. Beenen, C.H. Slump, Y.B. Roos and C.B. Majoie, "Automated brain computed tomographic densitometry of early ischemic changes in acute stroke," Journal of Medical Imaging, vol. 2, no. 1, pp. 014004, March 2015. click here
  • R.D. Rudyanto, S. Kerkstra, E.M. van Rikxoort, et al., "Comparing algorithms for automated vessel segmentation in Computed Tomography scans of the lung: The VESSEL12 study," Medical Image Analysis, vol. 18, no. 7, pp. 1217 - 1232, October 2014. click here
  • M. Staring, M.E. Bakker, J. Stolk, D.P. Shamonin, J.H.C. Reiber and B.C. Stoel, "Towards Local Progression Estimation of Pulmonary Emphysema using CT," Medical Physics, vol. 41, no. 2, pp. 021905-1 - 021905-13, February 2014. click here
  • D.P. Shamonin, E.E. Bron, B.P.F. Lelieveldt, M. Smits, S. Klein and M. Staring, "Fast Parallel Image Registration on CPU and GPU for Diagnostic Classification of Alzheimer's Disease," Frontiers in Neuroinformatics, vol. 7, no. 50, pp. 1-15, January 2014. click here
  • N. Baka, B.L. Kaptein, J.E. Giphart, M. Staring, M. de Bruijne, B.P.F. Lelieveldt and E. Valstar, "Evaluation of automated statistical shape model based knee kinematics from biplane fluoroscopy," Journal of Biomechanics, vol. 47, no. 1, pp. 122 - 129, January 2014. click here
  • L. Mengler, A. Khmelinskii, M. Diedenhofen, C. Po, M. Staring, B.P.F. Lelieveldt and M. Hoehn, "Brain maturation of the adolescent rat cortex and striatum: changes in volume and myelination," NeuroImage, vol. 84, no. 1, pp. 35-44, January 2014. click here
  • R. van ít Klooster, M. Staring, S. Klein, R.M. Kwee, M.E. Kooi, J.H.C. Reiber, B.P.F. Lelieveldt and R.J. van der Geest, "Automated registration of multispectral MR vessel wall images of the carotid artery," Medical Physics, vol. 40, no. 12, pp. 121904-1 - 121904-12, December 2013. click here
  • O. Dzyubachyk, J. Blaas, C.P. Botha, M. Staring, M. Reijnierse, J.L. Bloem, R.J. van der Geest and B.P.F. Lelieveldt, "Comparative Exploration of Whole-Body MR through Locally Rigid Transforms," International Journal of Computer Assisted Radiology and Surgery, vol. 8, no. 4, pp. 635 - 647, July 2013. click here
  • C. Xiao, M. Staring, Y. Wang, D.P. Shamonin and B.C. Stoel, "A Multiscale Bi-Gaussian Filter for Adjacent Curvilinear Structures Detection With Application to Vasculature Images," IEEE Transactions on Image Processing, vol. 22, no. 1, pp. 174 - 188, January 2013. click here
  • K. Murphy, B. van Ginneken, J.M. Reinhardt, et al., "Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge," IEEE Transactions on Medical Imaging, vol. 30, no. 11, pp. 1901 - 1920, November 2011. click here
  • C. Xiao, M. Staring, D.P. Shamonin, J.H.C. Reiber, J. Stolk and B.C. Stoel, "A Strain Energy Filter for 3D Vessel Enhancement with Application to Pulmonary CT Images," Medical Image Analysis, vol. 15, no. 1, pp. 112 - 124, February 2011. click here
  • K. Murphy, B. van Ginneken, S. Klein, M. Staring, M.A. Viergever and J.P.W. Pluim, "Semi-Automatic Construction of Reference Standards for Evaluation of Image Registration," Medical Image Analysis, vol. 15, no. 1, pp. 71 - 84, February 2011. click here
  • I. Išgum, A. Rutten, M. Prokop, M. Staring, S. Klein, J.P.W. Pluim, M.A. Viergever and B. van Ginneken, "Automated aortic calcium scoring on low-dose chest computed tomography," Medical Physics, vol. 37, no. 2, pp. 714 - 723, February 2010. click here
  • S. Klein*, M. Staring*, K. Murphy, M.A. Viergever and J.P.W. Pluim, "elastix: a toolbox for intensity-based medical image registration," IEEE Transactions on Medical Imaging, vol. 29, no. 1, pp. 196 - 205, January 2010. click here *In alphabetical order. Both authors contributed equally.
  • E.M. van Rikxoort, I. Išgum, Y. Arzhaeva, M. Staring, S. Klein, M.A. Viergever, J.P.W. Pluim and B. van Ginneken, "Adaptive Local Multi-Atlas Segmentation: Application to the Heart and the Caudate Nucleus," Medical Image Analysis, vol. 14, no. 1, pp. 39 - 49, February 2010. click here
  • M. Staring, U.A. van der Heide, S. Klein, M.A. Viergever and J.P.W. Pluim, "Registration of Cervical MRI Using Multifeature Mutual Information," IEEE Transactions on Medical Imaging, vol. 28, no. 9, pp. 1412 - 1421, September 2009. click here
  • I. Išgum, M. Staring, A. Rutten, M. Prokop, M.A. Viergever and B. van Ginneken, "Multi-Atlas-Based Segmentation With Local Decision Fusion - Application to Cardiac and Aortic Segmentation in CT Scans," IEEE Transactions on Medical Imaging, vol. 28, no. 7, pp. 1000 - 1010, July 2009. click here
  • S. Klein, J.P.W. Pluim, M. Staring and M.A. Viergever, "Adaptive Stochastic Gradient Descent Optimisation for Image Registration," International Journal of Computer Vision, vol. 81, no. 3, pp. 227 - 239, March 2009. click here
  • M. Staring, J.P.W. Pluim, B. de Hoop, S. Klein, B. van Ginneken, H. Gietema, G. Nossent, C. Schaefer-Prokop, S. van de Vorst and M. Prokop, "Image Subtraction Facilitates Assessment of Volume and Density Change in Ground-Glass Opacities in Chest CT," Investigative Radiology, vol. 44, no. 2, pp. 61 - 66, February 2009. click here
  • S. Klein, U.A. van der Heide, I.M. Lips, M. van Vulpen, M. Staring and J.P.W. Pluim, "Automatic Segmentation of the Prostate in 3D MR Images by Atlas Matching using Localised Mutual Information," Medical Physics, vol. 35, no. 4, pp. 1407 - 1417, April 2008. click here
  • M. Staring, S. Klein and J.P.W. Pluim, "Nonrigid Registration with Tissue-Dependent Filtering of the Deformation Field," Physics in Medicine and Biology, vol. 52, no. 23, pp. 6879 - 6892, December 2007. click here
  • S. Klein, M. Staring and J.P.W. Pluim, "Evaluation of Optimization Methods for Nonrigid Medical Image Registration using Mutual Information and B-splines," IEEE Transactions on Image Processing, vol. 16, no. 12, pp. 2879 - 2890, December 2007. click here
  • M. Staring, S. Klein and J.P.W. Pluim, "A Rigidity Penalty Term for Nonrigid Registration," Medical Physics, vol. 34, no. 11, pp. 4098 - 4108, November 2007. click here

Papers in conference proceedings

  • H. Sokooti, G. Saygili, B. Glocker, B.P.F. Lelieveldt and M. Staring, "Accuracy Estimation for Medical Image Registration Using Regression Forests," Medical Image Computing and Computer-Assisted Intervention, Lecture Notes in Computer Science, vol. 9902, pp. 107 - 115, October 2016. click here
  • K. Marstal, F. Berendsen, M. Staring and S. Klein, "SimpleElastix: A user-friendly, multi-lingual library for medical image registration," International Workshop on Biomedical Image Registration (WBIR), IEEE Conference on Computer Vision and Pattern Recognition Workshops, pp. 574 - 582, July 2016. click here
  • F. Berendsen, K. Marstal, S. Klein and M. Staring, "The design of SuperElastix - a unifying framework for a wide range of image registration methodologies," International Workshop on Biomedical Image Registration (WBIR), IEEE Conference on Computer Vision and Pattern Recognition Workshops, pp. 498 - 506, July 2016. click here
  • S. Uilkema, U.A. van der Heide, J. Sonke, M. Staring and J. Nijkamp, "MR-based contour propagation for rectal cancer patients," 18th International Conference on the use of Computers in Radiation Therapy, June 2016. click here
  • Z. Zhai, M. Staring and B.C. Stoel, "Lung vessel segmentation in CT images using graph cuts," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 9784, pp. 97842K - 97842K-8, February 2016. click here
  • Y. Qiao, Z. Sun, B.P.F. Lelieveldt and M. Staring, "A Stochastic Quasi-Newton Method for Non-rigid Image Registration," Medical Image Computing and Computer-Assisted Intervention, Lecture Notes in Computer Science, vol. 9350, pp. 297 - 304, September 2015. click here
  • Z. Sun, B.P.F. Lelieveldt and M. Staring, "Fast Linear Geodesic Shape Regression Using Coupled Logdemons Registration," IEEE International Symposium on Biomedical Imaging (ISBI), pp. 1276 - 1279, April 2015. click here
  • P.H. Kitslaar, R. van 't Klooster, M. Staring, B.P.F. Lelieveldt and R.J. van der Geest, "Segmentation of Branching Vascular Structures using Adaptive Subdivision Surface Fitting," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 9413, pp. 94133Z, February 2015. click here
  • N.N. Smit, B. Klein Haneveld, M. Staring, E. Eisemann, C.P. Botha and A. Vilanova, "RegistrationShop: An Interactive 3D Medical Volume Registration System," Eurographics Workshop on Visual Computing for Biology and Medicine, pp. 145 - 153, September 2014. click here
  • Y. Qiao, B.P.F. Lelieveldt and M. Staring, "Fast automatic estimation of the optimization step size for nonrigid image registration," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 9034, pp. 90341A, February 2014. click here
  • O. Dzyubachyk, R.J. van der Geest, M. Staring, P. Börnert, M. Reijnierse, J.L. Bloem and B.P.F. Lelieveldt, "Joint Intensity Inhomogeneity Correction for Whole-Body MR Data," Medical Image Computing and Computer-Assisted Intervention, Lecture Notes in Computer Science, vol. 8149, pp. 106 - 113, September 2013. click here
  • C. Xiao, M. Staring, J. Wang, D.P. Shamonin and B.C. Stoel, "A Derivative of Stick Filter for Pulmonary Fissure Detection in CT Images," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 8669, pp. 86690V, February 2013. click here
  • A. Khmelinskii, L. Mengler, P. Kitslaar, M. Staring, M. Hoehn and B.P.F. Lelieveldt, "A visualization platform for high-throughput, follow-up, co-registered multi-contrast MRI rat brain data," SPIE Medical Imaging: Biomedical Applications in Molecular, Structural, and Functional Imaging, Proceedings of SPIE, vol. 8672, pp. 86721W, February 2013. click here
  • M. Agarwal, M.E. Bakker, E.A. Hendriks, B.C. Stoel, J.H.C. Reiber and M. Staring, "Local SIMPLE Multi Atlas-Based Segmentation Applied to Lung Lobe Detection on Chest CT," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 8314, pp. 831410, February 2012. click here
  • D.P. Shamonin, M. Staring, M.E. Bakker, C. Xiao, J. Stolk, J.H.C. Reiber and B.C. Stoel, "Automatic Lung Lobe Segmentation of COPD Patients using Iterative B-Spline Fitting," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 8314, pp. 83140W, February 2012. click here
  • X. Liang, R. Kotagiri, Q. Yang, M. Staring and A. Pitman, "Generating Coefficients for Regularization Terms in Nonrigid Registration of Contrast-Enhanced MRI," Medical Image Computing and Computer-Assisted Intervention, Workshop on Breast Image Analysis, pp. 1 - 8, September 2011. click here
  • M. Baiker, M. Staring, C.W.G.M. Löwik, J.H.C. Reiber and B.P.F. Lelieveldt, "Automated Registration of Whole-Body Follow-Up MicroCT Data of Mice," Medical Image Computing and Computer-Assisted Intervention, Lecture Notes in Computer Science, vol. 6892, pp. 516 - 523, September 2011. click here
  • S. Klein, M. Staring, P. Andersson and J.P.W. Pluim, "Preconditioned Stochastic Gradient Descent Optimisation for Monomodal Image Registration," Medical Image Computing and Computer-Assisted Intervention, Lecture Notes in Computer Science, vol. 6892, pp. 549 - 556, September 2011. click here
  • M.J. van der Bom, S. Klein, M. Staring, R. Homan, L.W. Bartels and J.P.W. Pluim, "Evaluation of optimization methods for intensity-based 2D-3D registration in x-ray guided interventions," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 7962, pp. 796223, February 2011. click here
  • T. Farago, H. Nikolov, S. Klein, J.H.C. Reiber and M. Staring, "Semi-Automatic Parallelisation for Iterative Image Registration with B-splines," Medical Image Computing and Computer-Assisted Intervention, High Performance workshop, September 2011. click here
  • M. Staring, S. Klein, J.H.C. Reiber, W.J. Niessen and B.C. Stoel, "Pulmonary Image Registration With elastix Using a Standard Intensity-Based Algorithm," Medical Image Computing and Computer-Assisted Intervention, Medical Image Analysis for the Clinic: A Grand Challenge, September 2010. click here
  • C. Xiao, M. Staring, D.P. Shamonin, J.H.C. Reiber, J. Stolk and B.C. Stoel, "A Strain Energy Filter for 3D Vessel Enhancement," Medical Image Computing and Computer-Assisted Intervention, Lecture Notes in Computer Science, vol. 6363, pp. 367 - 374, 2010. click here
  • A.E.H. Scheenstra, M. Muskulus, M. Staring, A.M.J.V. van den Maagdenberg, S. Verduyn Lunel, J.H.C. Reiber, L. van der Weerd and J. Dijkstra, "The 3D Moore-Rayleigh Test for the Quantitative Groupwise Comparison of MR Brain Images," Information Processing in Medical Imaging, Lecture Notes in Computer Science, vol. 5636, pp. 564 - 575, July 2009. click here
  • M. Staring, M.E. Bakker, D.P. Shamonin, J. Stolk, J.H.C. Reiber and B.C. Stoel, "Towards Local Estimation of Emphysema Progression Using Image Registration," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 7259, pp. 72590O, February 2009. click here
  • K. Murphy, B. van Ginneken, J.P.W. Pluim, S. Klein and M. Staring, "Semi-automatic Reference Standard Construction for Quantitative Evaluation of Lung CT Registration," Medical Image Computing and Computer-Assisted Intervention, Lecture Notes in Computer Science, vol. 5242, pp. 1006 - 1013, September 2008. click here
  • K. Murphy, B. van Ginneken, J.P.W. Pluim, S. Klein and M. Staring, "Quantitative Assessment of Registration in Thoracic CT," The First International Workshop on Pulmonary Image Analysis, pp. 203 - 211, September 2008. click here
  • E. van Rikxoort, I. Isgum, M. Staring, S. Klein and B. van Ginneken, "Adaptive local multi-atlas segmentation: application to heart segmentation in chest CT scans," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 6914, pp. 691407, February 2008. click here
  • S. Klein, U.A. van der Heide, M. Staring, A.N.T.J. Kotte, B.W. Raaymakers and J.P.W. Pluim, "Segmentation of the Prostate in MR images by Atlas Matching using Localised Mutual Information," XVth International Conference on the use of Computers in Radiation Therapy, vol. 2, pp. 585 - 589, June 2007. click here
  • S. Klein, U.A. van der Heide, B.W. Raaymakers, A.N.T.J. Kotte, M. Staring and J.P.W. Pluim, "Segmentation of the prostate in MR images by atlas matching," IEEE International Symposium on Biomedical Imaging (ISBI), pp. 1300 - 1303, April 2007. click here
  • M. Staring, S. Klein and J.P.W. Pluim, "Evaluation of a Rigidity Penalty Term for Nonrigid Registration," Workshop on Image Registration in Deformable Environments, pp. 41 - 50, September 2006. click here
  • S. Klein, M. Staring and J.P.W. Pluim, "A Comparison of Acceleration Techniques for Nonrigid Medical Image Registration," International Workshop on Biomedical Image Registration (WBIR), Lecture Notes on Computer Science, vol. 4057, pp. 151 - 159, July 2006. click here
  • M. Staring, S. Klein and J.P.W. Pluim, "Nonrigid Registration Using a Rigidity Constraint," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 6144, pp. 355 - 364, February 2006. click here
  • H.J. Noordmans, R. de Roode, M. Staring and R. Verdaasdonk, "Registration and analysis of in-vivo multi-spectral images for correction of motion and comparison in time," SPIE Photonics West: Multimodal Biomedical Imaging, Proceedings of SPIE, vol. 6081, pp. 35 - 43, January 2006. click here
  • M. Staring, S. Klein and J.P.W. Pluim, "Nonrigid Registration with Adaptive, Content-Based Filtering of the Deformation Field," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 5747, pp. 212 - 221, February 2005. click here
  • S. Klein, M. Staring and J.P.W. Pluim, "Comparison of gradient approximation techniques for optimisation of mutual information in nonrigid registration," SPIE Medical Imaging: Image Processing, Proceedings of SPIE, vol. 5747, pp. 192 - 203, February 2005. click here
  • J.C. Oostveen, A.A.C. Kalker and M. Staring, "Adaptive quantization watermarking," Security, Steganography, and Watermarking of Multimedia Contents VI, Proceedings of SPIE, vol. 5306, pp. 296 - 303, January 2004. click here
  • M. Staring, J.C. Oostveen and A.A.C. Kalker, "Optimal distortion compensation for quantization watermarking," International Conference on Image Processing, vol. 2, pp. 727 - 730, September 2003. click here

Abstracts

  • A. Bani Yassien, G. Gobadi, M. Staring, B. van Triest, D. Lambregts, A. Betgen, C.A.M. Marijnen and U.A. van der Heide, "T2-weighted MR image registration of rectal tumours and mesorectum during radiotherapy," European Congress of Radiology, March 2017. click here
  • R. Shahzad, O. Dzyubachyk, M. Staring, B.P.F. Lelieveldt and R.J. van der Geest, "Framework For Automatic Labelling Of Arterial Tree From WB-MRA," IEEE International Symposium on Biomedical Imaging (ISBI), April 2016. click here
  • L. Mengler, A. Khmelinskii, M. Diedenhofen, C. Po, M. Staring, B.P.F. Lelieveldt and M. Hoehn, "When is a young rat brain adult? Volume and myelination changes in cortex and striatum," European Molecular Imaging Meeting, May 2013. click here
  • R. van ít Klooster, M. Staring, S. Klein, R.M. Kwee, M.E. Kooi, J.H.C. Reiber, B.P.F. Lelieveldt and R.J. van der Geest, "Automatic Registration of Multispectral MR Vessel Wall Images of the Carotid Artery," International Society for Magnetic Resonance in Medicine, May 2012. click here
  • A. Khmelinskii, L. Mengler, P. Kitslaar, M. Staring, C. Po, J.H.C. Reiber, M. Hoehn and B.P.F. Lelieveldt, "Interactive system for exploration of multi-modal rat brain data," European Molecular Imaging Meeting, pp. 122, June 2011. click here
  • L. Mengler, A. Khmelinskii, C. Po, M. Staring, J.H.C. Reiber, B.P.F. Lelieveldt and M. Hoehn, "Juvenile development and ageing mediated changes in cortical structure and volume in the rat brain," European Molecular Imaging Meeting, pp. 160, June 2011. click here
  • M. Staring, J. Stolk, M.E. Bakker, D. Shamonin, H. Reiber and B.C. Stoel, "Local progression estimation of pulmonary emphysema using image matching," European Respiratory Society Annual Congress, September 2009. click here
  • M. Staring, J.P.W. Pluim, B. de Hoop, S. Klein and M. Prokop, "Subtraction Imaging for Improved Detection of Change in Ground Glass Nodules in Chest Computed Tomography," European Radiology Supplements, vol. 18, supplement 1, pp. 137 - 336, March 2008. click here

Theses

  • M. Staring, "Intrasubject Registration for Change Analysis in Medical Imaging," PhD thesis, Utrecht University, October 2008. click here
  • M. Staring, "Analysis of Quantization based Watermarking," MSc thesis, University of Twente, Faculty of Applied Mathematics, December 2002. click here

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